Literature DB >> 18986167

Cysteine pK(a) values for the bacterial peroxiredoxin AhpC.

Kimberly J Nelson1, Derek Parsonage, Andrea Hall, P Andrew Karplus, Leslie B Poole.   

Abstract

Salmonella typhimurium AhpC is a founding member of the peroxiredoxin family, a ubiquitous group of cysteine-based peroxidases with high reactivity toward hydrogen peroxide, organic hydroperoxides, and peroxynitrite. For all of the peroxiredoxins, the catalytic cysteine, referred to as the peroxidatic cysteine (C(P)), acts as a nucleophile in attacking the peroxide substrate, forming a cysteine sulfenic acid at the active site. Because thiolates are far stronger nucleophiles than thiol groups, it is generally accepted that cysteine-based peroxidases should exhibit pK(a) values lower than an unperturbed value of 8.3-8.5. In this investigation, several independent approaches were used to assess the pK(a) of the two cysteinyl residues of AhpC. Methods using two different iodoacetamide derivatives yielded unperturbed pK(a) values (7.9-8.7) for both cysteines, apparently due to reactivity with the wrong conformation of C(P) (i.e., locally unfolded and flipped out of the active site), as supported by X-ray crystallographic analyses. A functional pK(a) of 5.94 +/- 0.10 presumably reflecting the titration of C(P) within the fully folded active site was obtained by measuring AhpC competition with horseradish peroxidase for hydrogen peroxide; this value is quite similar to that obtained by analyzing the pH dependence of the epsilon(240) of wild-type AhpC (5.84 +/- 0.02) and similar to those obtained for two typical 2-cysteine peroxiredoxins from Saccharomyces cerevisiae (5.4 and 6.0). Thus, the pK(a) value of AhpC balances the need for a deprotonated thiol (at pH 7, approximately 90% of the C(P) would be deprotonated) with the fact that thiolates with higher pK(a) values are stronger nucleophiles.

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Year:  2008        PMID: 18986167      PMCID: PMC2645924          DOI: 10.1021/bi801718d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  Roles for the two cysteine residues of AhpC in catalysis of peroxide reduction by alkyl hydroperoxide reductase from Salmonella typhimurium.

Authors:  H R Ellis; L B Poole
Journal:  Biochemistry       Date:  1997-10-28       Impact factor: 3.162

2.  Reactions of yeast thioredoxin peroxidases I and II with hydrogen peroxide and peroxynitrite: rate constants by competitive kinetics.

Authors:  Renata Ogusucu; Daniel Rettori; Daniela Cristina Munhoz; Luis Eduardo Soares Netto; Ohara Augusto
Journal:  Free Radic Biol Med       Date:  2006-10-20       Impact factor: 7.376

3.  A kinetic study of the reaction of horseradish peroxidase with hydrogen peroxide.

Authors:  D Dolman; G A Newell; M D Thurlow
Journal:  Can J Biochem       Date:  1975-05

4.  Thiolate-imidazolium ion pair is not an obligatory catalytic entity of cysteine peptidases: the active site of picornain 3C.

Authors:  Z Sárkány; Z Szeltner; L Polgár
Journal:  Biochemistry       Date:  2001-09-04       Impact factor: 3.162

5.  The ability of scavengers to distinguish OH. production in the iron-catalyzed Haber-Weiss reaction: comparison of four assays for OH.

Authors:  C C Winterbourn
Journal:  Free Radic Biol Med       Date:  1987       Impact factor: 7.376

6.  Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins.

Authors:  Zachary A Wood; Leslie B Poole; Roy R Hantgan; P Andrew Karplus
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

7.  Peculiar spectroscopic and kinetic properties of Cys-47 in human placental glutathione transferase. Evidence for an atypical thiolate ion pair near the active site.

Authors:  M Lo Bello; M W Parker; A Desideri; F Polticelli; M Falconi; G Del Boccio; A Pennelli; G Federici; G Ricci
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8.  Differential reactivity of the functional sulfhydryl groups of cysteine-32 and cysteine-35 present in the reduced form of thioredoxin from Escherichia coli.

Authors:  G B Kallis; A Holmgren
Journal:  J Biol Chem       Date:  1980-11-10       Impact factor: 5.157

Review 9.  Structure, mechanism and regulation of peroxiredoxins.

Authors:  Zachary A Wood; Ewald Schröder; J Robin Harris; Leslie B Poole
Journal:  Trends Biochem Sci       Date:  2003-01       Impact factor: 13.807

Review 10.  Protein sulfenic acids in redox signaling.

Authors:  Leslie B Poole; P Andrew Karplus; Al Claiborne
Journal:  Annu Rev Pharmacol Toxicol       Date:  2004       Impact factor: 13.820

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  43 in total

Review 1.  Peroxiredoxin functions as a peroxidase and a regulator and sensor of local peroxides.

Authors:  Sue Goo Rhee; Hyun Ae Woo; In Sup Kil; Soo Han Bae
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2.  Structural evidence that peroxiredoxin catalytic power is based on transition-state stabilization.

Authors:  Andrea Hall; Derek Parsonage; Leslie B Poole; P Andrew Karplus
Journal:  J Mol Biol       Date:  2010-07-17       Impact factor: 5.469

3.  X-ray structures of thioredoxin and thioredoxin reductase from Entamoeba histolytica and prevailing hypothesis of the mechanism of Auranofin action.

Authors:  Derek Parsonage; Fang Sheng; Ken Hirata; Anjan Debnath; James H McKerrow; Sharon L Reed; Ruben Abagyan; Leslie B Poole; Larissa M Podust
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Review 4.  Detection of electrophile-sensitive proteins.

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5.  Oxidation of cysteine 645 of cobalamin-independent methionine synthase causes a methionine limitation in Escherichia coli.

Authors:  Elise R Hondorp; Rowena G Matthews
Journal:  J Bacteriol       Date:  2009-03-13       Impact factor: 3.490

6.  The sensitive balance between the fully folded and locally unfolded conformations of a model peroxiredoxin.

Authors:  Arden Perkins; Kimberly J Nelson; Jared R Williams; Derek Parsonage; Leslie B Poole; P Andrew Karplus
Journal:  Biochemistry       Date:  2013-11-20       Impact factor: 3.162

Review 7.  Overview of peroxiredoxins in oxidant defense and redox regulation.

Authors:  Leslie B Poole; Andrea Hall; Kimberly J Nelson
Journal:  Curr Protoc Toxicol       Date:  2011-08

8.  Measurement of peroxiredoxin activity.

Authors:  Kimberly J Nelson; Derek Parsonage
Journal:  Curr Protoc Toxicol       Date:  2011-08

9.  Staphylococcus aureus sortase A contributes to the Trojan horse mechanism of immune defense evasion with its intrinsic resistance to Cys184 oxidation.

Authors:  Jeffrey A Melvin; Christine F Murphy; Laura G Dubois; J Will Thompson; M Arthur Moseley; Dewey G McCafferty
Journal:  Biochemistry       Date:  2011-08-10       Impact factor: 3.162

Review 10.  Orchestrating redox signaling networks through regulatory cysteine switches.

Authors:  Candice E Paulsen; Kate S Carroll
Journal:  ACS Chem Biol       Date:  2010-01-15       Impact factor: 5.100

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