Literature DB >> 19594426

The Seattle Structural Genomics Center for Infectious Disease (SSGCID).

P J Myler1, R Stacy, L Stewart, B L Staker, W C Van Voorhis, G Varani, G W Buchko.   

Abstract

The NIAID-funded Seattle Structural Genomics Center for Infectious Disease (SSGCID) is a consortium established to apply structural genomics approaches to potential drug targets from NIAID priority organisms for biodefense and emerging and re-emerging diseases. The mission of the SSGCID is to determine approximately 400 protein structures over the next five years. In order to maximize biomedical impact, ligand-based drug-lead discovery campaigns will be pursued for a small number of high-impact targets. Here we review the center's target selection processes, which include pro-active engagement of the infectious disease research and drug therapy communities to identify drug targets, essential enzymes, virulence factors and vaccine candidates of biomedical relevance to combat infectious diseases. This is followed by a brief overview of the SSGCID structure determination pipeline and ligand screening methodology. Finally, specifics of our resources available to the scientific community are presented. Physical materials and data produced by SSGCID will be made available to the scientific community, with the aim that they will provide essential groundwork benefiting future research and drug discovery.

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Year:  2009        PMID: 19594426      PMCID: PMC2857597          DOI: 10.2174/187152609789105687

Source DB:  PubMed          Journal:  Infect Disord Drug Targets        ISSN: 1871-5265


  24 in total

1.  The stationary-phase morphogene bolA from Escherichia coli is induced by stress during early stages of growth.

Authors:  J M Santos; P Freire; M Vicente; C M Arraiano
Journal:  Mol Microbiol       Date:  1999-05       Impact factor: 3.501

Review 2.  Fragment-based drug discovery.

Authors:  Daniel A Erlanson; Robert S McDowell; Tom O'Brien
Journal:  J Med Chem       Date:  2004-07-01       Impact factor: 7.446

3.  A facile method for high-throughput co-expression of protein pairs.

Authors:  Andrei Alexandrov; Marissa Vignali; Douglas J LaCount; Erin Quartley; Christina de Vries; Daniela De Rosa; Julie Babulski; Sarah F Mitchell; Lori W Schoenfeld; Stanley Fields; Wim G Hol; Mark E Dumont; Eric M Phizicky; Elizabeth J Grayhack
Journal:  Mol Cell Proteomics       Date:  2004-07-07       Impact factor: 5.911

4.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

5.  NMR structure note--solution structure of a bacterial BolA-like protein XC975 from a plant pathogen Xanthomonas campestris pv. campestris.

Authors:  Ko-Hsin Chin; Fu-Yang Lin; Yu-Chen Hu; Kong Hung Sze; Ping-Chiang Lyu; Shan-Ho Chou
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

Review 6.  Ribosomal modification and resistance in antibiotic-producing organisms.

Authors:  E Cundliffe
Journal:  Biochem Soc Symp       Date:  1987

7.  Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.

Authors:  Robert C Tyler; David J Aceti; Craig A Bingman; Claudia C Cornilescu; Brian G Fox; Ronnie O Frederick; Won Bae Jeon; Min S Lee; Craig S Newman; Francis C Peterson; George N Phillips; Mark N Shahan; Shanteri Singh; Jikui Song; Hassan K Sreenath; Ejan M Tyler; Eldon L Ulrich; Dmitriy A Vinarov; Frank C Vojtik; Brian F Volkman; Russell L Wrobel; Qin Zhao; John L Markley
Journal:  Proteins       Date:  2005-05-15

8.  Crystal structures of human glutaryl-CoA dehydrogenase with and without an alternate substrate: structural bases of dehydrogenation and decarboxylation reactions.

Authors:  Zhuji Fu; Ming Wang; Rosemary Paschke; K Sudhindra Rao; Frank E Frerman; Jung-Ja P Kim
Journal:  Biochemistry       Date:  2004-08-03       Impact factor: 3.162

9.  Using an Escherichia coli cell-free extract to screen for soluble expression of recombinant proteins.

Authors:  Didier Busso; Rosalind Kim; Sung-Hou Kim
Journal:  J Struct Funct Genomics       Date:  2004

10.  Solution structure of a BolA-like protein from Mus musculus.

Authors:  Takuma Kasai; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Natsuko Matsuda; Yasuko Tomo; Mikako Shirouzu; Takaho Terada; Naomi Obayashi; Hiroaki Hamana; Naoko Shinya; Ayako Tatsuguchi; Satoko Yasuda; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Harukazu Suzuki; Takahiro Arakawa; Piero Carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2004-01-10       Impact factor: 6.725

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  69 in total

1.  Rickettsia prowazekii methionine aminopeptidase as a promising target for the development of antibacterial agents.

Authors:  Travis R Helgren; Congling Chen; Phumvadee Wangtrakuldee; Thomas E Edwards; Bart L Staker; Jan Abendroth; Banumathi Sankaran; Nicole A Housley; Peter J Myler; Jonathon P Audia; James R Horn; Timothy J Hagen
Journal:  Bioorg Med Chem       Date:  2016-11-10       Impact factor: 3.641

2.  Crystal structures of Mycobacterial MeaB and MMAA-like GTPases.

Authors:  Thomas E Edwards; Loren Baugh; Jameson Bullen; Ruth O Baydo; Pam Witte; Kaitlin Thompkins; Isabelle Q H Phan; Jan Abendroth; Matthew C Clifton; Banumathi Sankaran; Wesley C Van Voorhis; Peter J Myler; Bart L Staker; Christoph Grundner; Donald D Lorimer
Journal:  J Struct Funct Genomics       Date:  2015-04-02

3.  PSI:Biology-materials repository: a biologist's resource for protein expression plasmids.

Authors:  Catherine Y Cormier; Jin G Park; Michael Fiacco; Jason Steel; Preston Hunter; Jason Kramer; Rajeev Singla; Joshua LaBaer
Journal:  J Struct Funct Genomics       Date:  2011-03-01

4.  Structures of a histidine triad family protein from Entamoeba histolytica bound to sulfate, AMP and GMP.

Authors:  Donald D Lorimer; Ryan Choi; Ariel Abramov; Stephen Nakazawa Hewitt; Anna S Gardberg; Wesley C Van Voorhis; Bart L Staker; Peter J Myler; Thomas E Edwards
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-04-21       Impact factor: 1.056

5.  Ab initio structure solution of a proteolytic fragment using ARCIMBOLDO.

Authors:  Jan Abendroth; Banumathi Sankaran; Peter J Myler; Donald D Lorimer; Thomas E Edwards
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-08-29       Impact factor: 1.056

6.  The identification of inhibitory compounds of Rickettsia prowazekii methionine aminopeptidase for antibacterial applications.

Authors:  Travis R Helgren; Elif S Seven; Congling Chen; Thomas E Edwards; Bart L Staker; Jan Abendroth; Peter J Myler; James R Horn; Timothy J Hagen
Journal:  Bioorg Med Chem Lett       Date:  2018-03-15       Impact factor: 2.823

7.  Identification of P218 as a potent inhibitor of Mycobacterium ulcerans DHFR.

Authors:  Gustavo P Riboldi; Rachael Zigweid; Peter J Myler; Stephen J Mayclin; Rafael M Couñago; Bart L Staker
Journal:  RSC Med Chem       Date:  2020-10-22

8.  To automate or not to automate: this is the question.

Authors:  M Cymborowski; M Klimecka; M Chruszcz; M D Zimmerman; I A Shumilin; D Borek; K Lazarski; A Joachimiak; Z Otwinowski; W Anderson; W Minor
Journal:  J Struct Funct Genomics       Date:  2010-06-06

9.  Solution structure of a putative FKBP-type peptidyl-propyl cis-trans isomerase from Giardia lamblia.

Authors:  Garry W Buchko; Stephen N Hewitt; Wesley C Van Voorhis; Peter J Myler
Journal:  J Biomol NMR       Date:  2013-11-29       Impact factor: 2.835

10.  Crystal structure and putative substrate identification for the Entamoeba histolytica low molecular weight tyrosine phosphatase.

Authors:  Alicia S Linford; Nona M Jiang; Thomas E Edwards; Nicholas E Sherman; Wesley C Van Voorhis; Lance J Stewart; Peter J Myler; Bart L Staker; William A Petri
Journal:  Mol Biochem Parasitol       Date:  2014-02-15       Impact factor: 1.759

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