Literature DB >> 34678159

Native state fluctuations in a peroxiredoxin active site match motions needed for catalysis.

Aidan B Estelle1, Patrick N Reardon2, Seth H Pinckney1, Leslie B Poole3, Elisar Barbar4, P Andrew Karplus5.   

Abstract

Peroxiredoxins are ubiquitous enzymes that detoxify peroxides and regulate redox signaling. During catalysis, a "peroxidatic" cysteine (CP) in the conserved active site reduces peroxide while being oxidized to a CP-sulfenate, prompting a local unfolding event that enables formation of a disulfide with a second, "resolving" cysteine. Here, we use nuclear magnetic resonance spectroscopy to probe the dynamics of the CP-thiolate and disulfide forms of Xanthomonas campestris peroxiredoxin Q. Chemical exchange saturation transfer behavior of the resting enzyme reveals 26 residues in and around the active site exchanging at a rate of 72 s-1 with a locally unfolded, high-energy (2.5% of the population) state. This unequivocally establishes that a catalytically relevant local unfolding equilibrium exists in the enzyme's CP-thiolate form. Also, faster motions imply an active site instability that could promote local unfolding and, based on other work, be exacerbated by CP-sulfenate formation so as to direct the enzyme along a functional catalytic trajectory.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Modelfree Analysis; chemical exchange saturation transfer; enzyme catalysis; hydrogen exchange; nuclear magnetic resonance spectroscopy; peroxiredoxin; protein dynamics

Mesh:

Substances:

Year:  2021        PMID: 34678159      PMCID: PMC8818020          DOI: 10.1016/j.str.2021.10.001

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  62 in total

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8.  Backbone chemical shift assignments for Xanthomonas campestris peroxiredoxin Q in the reduced and oxidized states: a dramatic change in backbone dynamics.

Authors:  Garry W Buchko; Arden Perkins; Derek Parsonage; Leslie B Poole; P Andrew Karplus
Journal:  Biomol NMR Assign       Date:  2015-09-15       Impact factor: 0.746

9.  Rapid protein global fold determination using ultrasparse sampling, high-dynamic range artifact suppression, and time-shared NOESY.

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Journal:  Bioinformatics       Date:  2012-10-11       Impact factor: 6.937

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