Literature DB >> 26386606

Factors that Influence the Formation and Stability of Thin, Cryo-EM Specimens.

Robert M Glaeser1, Bong-Gyoon Han2, Roseann Csencsits2, Alison Killilea2, Arto Pulk3, Jamie H D Cate4.   

Abstract

Poor consistency of the ice thickness from one area of a cryo-electron microscope (cryo-EM) specimen grid to another, from one grid to the next, and from one type of specimen to another, motivates a reconsideration of how to best prepare suitably thin specimens. Here we first review the three related topics of wetting, thinning, and stability against dewetting of aqueous films spread over a hydrophilic substrate. We then suggest that the importance of there being a surfactant monolayer at the air-water interface of thin, cryo-EM specimens has been largely underappreciated. In fact, a surfactant layer (of uncontrolled composition and surface pressure) can hardly be avoided during standard cryo-EM specimen preparation. We thus suggest that better control over the composition and properties of the surfactant layer may result in more reliable production of cryo-EM specimens with the desired thickness.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26386606      PMCID: PMC4775786          DOI: 10.1016/j.bpj.2015.07.050

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Alignment error envelopes for single particle analysis.

Authors:  G J Jensen
Journal:  J Struct Biol       Date:  2001 Feb-Mar       Impact factor: 2.867

2.  How does a thin wetted film dry up?

Authors: 
Journal:  Phys Rev Lett       Date:  1994-05-30       Impact factor: 9.161

3.  Phospholipid, nature's own slide and cover slip for cryo-electron microscopy.

Authors:  P M Frederik; M C Stuart; P H Bomans; W M Busing
Journal:  J Microsc       Date:  1989-01       Impact factor: 1.758

4.  Hydrophilic support films of controlled thickness and composition.

Authors:  K A Taylor; R M Glaeser
Journal:  Rev Sci Instrum       Date:  1973-10       Impact factor: 1.523

5.  Cryo-electron microscopy of viruses.

Authors:  M Adrian; J Dubochet; J Lepault; A W McDowall
Journal:  Nature       Date:  1984 Mar 1-7       Impact factor: 49.962

6.  2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor.

Authors:  Alberto Bartesaghi; Alan Merk; Soojay Banerjee; Doreen Matthies; Xiongwu Wu; Jacqueline L S Milne; Sriram Subramaniam
Journal:  Science       Date:  2015-05-07       Impact factor: 47.728

7.  Range and magnitude of the steric pressure between bilayers containing phospholipids with covalently attached poly(ethylene glycol).

Authors:  A K Kenworthy; K Hristova; D Needham; T J McIntosh
Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

8.  Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

Authors:  Xueming Li; Paul Mooney; Shawn Zheng; Christopher R Booth; Michael B Braunfeld; Sander Gubbens; David A Agard; Yifan Cheng
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

9.  TRPV1 structures in distinct conformations reveal activation mechanisms.

Authors:  Erhu Cao; Maofu Liao; Yifan Cheng; David Julius
Journal:  Nature       Date:  2013-12-05       Impact factor: 49.962

10.  2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy.

Authors:  Melody G Campbell; David Veesler; Anchi Cheng; Clinton S Potter; Bridget Carragher
Journal:  Elife       Date:  2015-03-11       Impact factor: 8.140

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  32 in total

Review 1.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

2.  Routine single particle CryoEM sample and grid characterization by tomography.

Authors:  Venkata P Dandey; Hui Wei; Alex J Noble; Julia Brasch; Jillian Chase; Priyamvada Acharya; Yong Zi Tan; Zhening Zhang; Laura Y Kim; Giovanna Scapin; Micah Rapp; Edward T Eng; William J Rice; Anchi Cheng; Carl J Negro; Lawrence Shapiro; Peter D Kwong; David Jeruzalmi; Amedee des Georges; Clinton S Potter; Bridget Carragher
Journal:  Elife       Date:  2018-05-29       Impact factor: 8.140

3.  Best practices for managing large CryoEM facilities.

Authors:  Bart Alewijnse; Alun W Ashton; Melissa G Chambers; Songye Chen; Anchi Cheng; Mark Ebrahim; Edward T Eng; Wim J H Hagen; Abraham J Koster; Claudia S López; Natalya Lukoyanova; Joaquin Ortega; Ludovic Renault; Steve Reyntjens; William J Rice; Giovanna Scapin; Raymond Schrijver; Alistair Siebert; Scott M Stagg; Valerie Grum-Tokars; Elizabeth R Wright; Shenping Wu; Zhiheng Yu; Z Hong Zhou; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2017-08-04       Impact factor: 2.867

Review 4.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

5.  Cryo-Electron Tomography of Reconstituted Biomolecular Condensates.

Authors:  Fergus Tollervey; Xiaojie Zhang; Mainak Bose; Jenny Sachweh; Jeffrey B Woodruff; Titus M Franzmann; Julia Mahamid
Journal:  Methods Mol Biol       Date:  2023

Review 6.  Single-Particle Refinement and Variability Analysis in EMAN2.1.

Authors:  S J Ludtke
Journal:  Methods Enzymol       Date:  2016-07-01       Impact factor: 1.600

7.  Design of a molecular support for cryo-EM structure determination.

Authors:  Thomas G Martin; Tanmay A M Bharat; Andreas C Joerger; Xiao-Chen Bai; Florian Praetorius; Alan R Fersht; Hendrik Dietz; Sjors H W Scheres
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

Review 8.  Understanding the invisible hands of sample preparation for cryo-EM.

Authors:  Giulia Weissenberger; Rene J M Henderikx; Peter J Peters
Journal:  Nat Methods       Date:  2021-05-07       Impact factor: 47.990

Review 9.  Specimen Preparation for High-Resolution Cryo-EM.

Authors:  L A Passmore; C J Russo
Journal:  Methods Enzymol       Date:  2016-06-16       Impact factor: 1.600

Review 10.  Towards correlative super-resolution fluorescence and electron cryo-microscopy.

Authors:  Georg Wolff; Christoph Hagen; Kay Grünewald; Rainer Kaufmann
Journal:  Biol Cell       Date:  2016-06-22       Impact factor: 4.458

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