Literature DB >> 26358001

Reference Standardization for Mass Spectrometry and High-resolution Metabolomics Applications to Exposome Research.

Young-Mi Go1, Douglas I Walker2, Yongliang Liang1, Karan Uppal1, Quinlyn A Soltow1, ViLinh Tran1, Frederick Strobel3, Arshed A Quyyumi4, Thomas R Ziegler5, Kurt D Pennell6, Gary W Miller7, Dean P Jones8.   

Abstract

The exposome is the cumulative measure of environmental influences and associated biological responses throughout the lifespan, including exposures from the environment, diet, behavior, and endogenous processes. A major challenge for exposome research lies in the development of robust and affordable analytic procedures to measure the broad range of exposures and associated biologic impacts occurring over a lifetime. Biomonitoring is an established approach to evaluate internal body burden of environmental exposures, but use of biomonitoring for exposome research is often limited by the high costs associated with quantification of individual chemicals. High-resolution metabolomics (HRM) uses ultra-high resolution mass spectrometry with minimal sample preparation to support high-throughput relative quantification of thousands of environmental, dietary, and microbial chemicals. HRM also measures metabolites in most endogenous metabolic pathways, thereby providing simultaneous measurement of biologic responses to environmental exposures. The present research examined quantification strategies to enhance the usefulness of HRM data for cumulative exposome research. The results provide a simple reference standardization protocol in which individual chemical concentrations in unknown samples are estimated by comparison to a concurrently analyzed, pooled reference sample with known chemical concentrations. The approach was tested using blinded analyses of amino acids in human samples and was found to be comparable to independent laboratory results based on surrogate standardization or internal standardization. Quantification was reproducible over a 13-month period and extrapolated to thousands of chemicals. The results show that reference standardization protocol provides an effective strategy that will enhance data collection for cumulative exposome research. In principle, the approach can be extended to other types of mass spectrometry and other analytical methods.
© The Author 2015. Published by Oxford University Press on behalf of the Society of Toxicology. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  amino acids; analytical chemistry; environment; mass spectrometry; metabolomics

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Year:  2015        PMID: 26358001      PMCID: PMC4675836          DOI: 10.1093/toxsci/kfv198

Source DB:  PubMed          Journal:  Toxicol Sci        ISSN: 1096-0929            Impact factor:   4.849


  47 in total

1.  Ion suppression effects in liquid chromatography-electrospray-ionisation transport-region collision induced dissociation mass spectrometry with different serum extraction methods for systematic toxicological analysis with mass spectra libraries.

Authors:  Claudia Müller; Patrick Schäfer; Mylène Störtzel; Susanne Vogt; Wolfgang Weinmann
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2002-06-15       Impact factor: 3.205

2.  Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards.

Authors:  Weixun Wang; Haihong Zhou; Hua Lin; Sushmita Roy; Thomas A Shaler; Lander R Hill; Scott Norton; Praveen Kumar; Markus Anderle; Christopher H Becker
Journal:  Anal Chem       Date:  2003-09-15       Impact factor: 6.986

Review 3.  Matrix effects in quantitative pesticide analysis using liquid chromatography-mass spectrometry.

Authors:  W M A Niessen; P Manini; R Andreoli
Journal:  Mass Spectrom Rev       Date:  2006 Nov-Dec       Impact factor: 10.946

4.  Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation.

Authors:  Sabina Bijlsma; Ivana Bobeldijk; Elwin R Verheij; Raymond Ramaker; Sunil Kochhar; Ian A Macdonald; Ben van Ommen; Age K Smilde
Journal:  Anal Chem       Date:  2006-01-15       Impact factor: 6.986

5.  The art and practice of systems biology in medicine: mapping patterns of relationships.

Authors:  J van der Greef; S Martin; P Juhasz; A Adourian; T Plasterer; E R Verheij; R N McBurney
Journal:  J Proteome Res       Date:  2007-03-21       Impact factor: 4.466

6.  Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

Authors:  Dirk Chelius; Pavel V Bondarenko
Journal:  J Proteome Res       Date:  2002 Jul-Aug       Impact factor: 4.466

7.  apLCMS--adaptive processing of high-resolution LC/MS data.

Authors:  Tianwei Yu; Youngja Park; Jennifer M Johnson; Dean P Jones
Journal:  Bioinformatics       Date:  2009-05-04       Impact factor: 6.937

8.  Determination of phosphoric acid triesters in human plasma using solid-phase microextraction and gas chromatography coupled to inductively coupled plasma mass spectrometry.

Authors:  Monika Shah; Juris Meija; Baiba Cabovska; Joseph A Caruso
Journal:  J Chromatogr A       Date:  2005-12-06       Impact factor: 4.759

9.  METLIN: a metabolite mass spectral database.

Authors:  Colin A Smith; Grace O'Maille; Elizabeth J Want; Chuan Qin; Sunia A Trauger; Theodore R Brandon; Darlene E Custodio; Ruben Abagyan; Gary Siuzdak
Journal:  Ther Drug Monit       Date:  2005-12       Impact factor: 3.681

10.  A rapid LC-FTMS method for the analysis of cysteine, cystine and cysteine/cystine steady-state redox potential in human plasma.

Authors:  Jennifer M Johnson; Fredrick H Strobel; Matthew Reed; Jan Pohl; Dean P Jones
Journal:  Clin Chim Acta       Date:  2008-06-27       Impact factor: 3.786

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  106 in total

1.  Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults.

Authors:  Elaine A Yu; Tianwei Yu; Dean P Jones; Reynaldo Martorell; Manuel Ramirez-Zea; Aryeh D Stein
Journal:  J Nutr       Date:  2020-08-01       Impact factor: 4.798

2.  Metabolomics and Mycobacterial Disease: Don't Forget the Bioinformatics.

Authors:  Jeffrey M Collins; Russell R Kempker; Thomas R Ziegler; Henry M Blumberg; Dean P Jones
Journal:  Ann Am Thorac Soc       Date:  2016-01

3.  Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells reveals disease-related perturbations in metabolism.

Authors:  Matthew Ryan Smith; Zachery R Jarrell; Michael Orr; Ken H Liu; Young-Mi Go; Dean P Jones
Journal:  Environ Int       Date:  2020-12-21       Impact factor: 9.621

4.  Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D3 administration.

Authors:  Jessica A Alvarez; Elizabeth Y Chong; Douglas I Walker; Joshua D Chandler; Ellen S Michalski; Ruth E Grossmann; Karan Uppal; Shuzhao Li; Jennifer K Frediani; Rabindra Tirouvanziam; ViLinh T Tran; Vin Tangpricha; Dean P Jones; Thomas R Ziegler
Journal:  Metabolism       Date:  2017-02-11       Impact factor: 8.694

Review 5.  The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease.

Authors:  Germaine M Buck Louis; Melissa M Smarr; Chirag J Patel
Journal:  Curr Environ Health Rep       Date:  2017-03

Review 6.  Selenium at the redox interface of the genome, metabolome and exposome.

Authors:  Jolyn Fernandes; Xin Hu; M Ryan Smith; Young-Mi Go; Dean P Jones
Journal:  Free Radic Biol Med       Date:  2018-06-05       Impact factor: 7.376

7.  Metabolomic profiles of plasma, exhaled breath condensate, and saliva are correlated with potential for air toxics detection.

Authors:  Chandresh Nanji Ladva; Rachel Golan; Roby Greenwald; Tianwei Yu; Stefanie Ebelt Sarnat; W Dana Flanders; Karan Uppal; Douglas I Walker; ViLinh Tran; Donghai Liang; Dean P Jones; Jeremy A Sarnat
Journal:  J Breath Res       Date:  2017-12-06       Impact factor: 3.262

8.  Tryptophan catabolism reflects disease activity in human tuberculosis.

Authors:  Jeffrey M Collins; Amnah Siddiqa; Dean P Jones; Ken Liu; Russell R Kempker; Azhar Nizam; N Sarita Shah; Nazir Ismail; Samuel G Ouma; Nestani Tukvadze; Shuzhao Li; Cheryl L Day; Jyothi Rengarajan; James Cm Brust; Neel R Gandhi; Joel D Ernst; Henry M Blumberg; Thomas R Ziegler
Journal:  JCI Insight       Date:  2020-05-21

9.  The Exposome: A New Frontier for Education.

Authors:  Kristine K Dennis; Dean P Jones
Journal:  Am Biol Teach       Date:  2016-09       Impact factor: 0.342

Review 10.  Computational Metabolomics: A Framework for the Million Metabolome.

Authors:  Karan Uppal; Douglas I Walker; Ken Liu; Shuzhao Li; Young-Mi Go; Dean P Jones
Journal:  Chem Res Toxicol       Date:  2016-10-12       Impact factor: 3.739

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