Literature DB >> 29883789

Selenium at the redox interface of the genome, metabolome and exposome.

Jolyn Fernandes1, Xin Hu1, M Ryan Smith1, Young-Mi Go2, Dean P Jones3.   

Abstract

Selenium (Se) is a redox-active environmental mineral that is converted to only a small number of metabolites and required for a relatively small number of mammalian enzymes. Despite this, dietary and environmental Se has extensive impact on every layer of omics space. This highlights a need for global network response structures to provide reference for targeted, hypothesis-driven Se research. In this review, we survey the Se research literature from the perspective of the responsive physical and chemical barrier between an organism (functional genome) and its environment (exposome), which we have previously termed the redox interface. Recent advances in metabolomics allow molecular phenotyping of the integrated genome-metabolome-exposome structure. Use of metabolomics with transcriptomics to map functional network responses to supplemental Se in mice revealed complex network responses linked to dyslipidemia and weight gain. Central metabolic hubs in the network structure in liver were not directly linked to transcripts for selenoproteins but were, instead, linked to transcripts for glucose transport and fatty acid β-oxidation. The experimental results confirm the survey of research literature in showing that Se interacts with the functional genome through a complex network response structure. The results imply that systematic application of data-driven integrated omics methods to models with controlled Se exposure could disentangle health benefits and risks from Se exposures and also serve more broadly as an experimental paradigm for exposome research.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dietary supplement; Environmental toxicity; Integrative omics; Nutritional requirements; Oxidative stress; Selenium metabolism

Mesh:

Substances:

Year:  2018        PMID: 29883789      PMCID: PMC6168380          DOI: 10.1016/j.freeradbiomed.2018.06.002

Source DB:  PubMed          Journal:  Free Radic Biol Med        ISSN: 0891-5849            Impact factor:   7.376


  164 in total

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Authors:  Q Li; S Sanlioglu; S Li; T Ritchie; L Oberley; J F Engelhardt
Journal:  Antioxid Redox Signal       Date:  2001-06       Impact factor: 8.401

Review 2.  Biosynthesis of selenocysteine, the 21st amino acid in the genetic code, and a novel pathway for cysteine biosynthesis.

Authors:  Anton A Turanov; Xue-Ming Xu; Bradley A Carlson; Min-Hyuk Yoo; Vadim N Gladyshev; Dolph L Hatfield
Journal:  Adv Nutr       Date:  2011-03-10       Impact factor: 8.701

3.  Mapping of selenium metabolic pathway in yeast by liquid chromatography-Orbitrap mass spectrometry.

Authors:  Yulan Rao; Margaret McCooeye; Anthony Windust; Emilia Bramanti; Alessandro D'Ulivo; Zoltán Mester
Journal:  Anal Chem       Date:  2010-10-01       Impact factor: 6.986

4.  Selenium regulation of glutathione peroxidase in human hepatoma cell line Hep3B.

Authors:  R D Baker; S S Baker; K LaRosa; C Whitney; P E Newburger
Journal:  Arch Biochem Biophys       Date:  1993-07       Impact factor: 4.013

5.  Effect of selenium depletion and repletion on plasma glutathione and glutathione-dependent enzymes in the rat.

Authors:  K E Hill; R F Burk; J M Lane
Journal:  J Nutr       Date:  1987-01       Impact factor: 4.798

6.  Selenium and drug metabolism--I. Multiple modulations of mouse liver enzymes.

Authors:  R Reiter; A Wendel
Journal:  Biochem Pharmacol       Date:  1983-10-15       Impact factor: 5.858

7.  Cancer mortality correlation studies--III: statistical associations with dietary selenium intakes.

Authors:  G N Schrauzer; D A White; C J Schneider
Journal:  Bioinorg Chem       Date:  1977

8.  Association study of polymorphisms in selenoprotein genes and Kashin-Beck disease and serum selenium/iodine concentration in a Tibetan population.

Authors:  Lulin Huang; Yi Shi; Fang Lu; Hong Zheng; Xiaoqi Liu; Bo Gong; Jiyun Yang; Ying Lin; Jing Cheng; Shi Ma; He Lin; Zhenglin Yang
Journal:  PLoS One       Date:  2013-08-23       Impact factor: 3.240

9.  Redox biology: interface of the exposome with the proteome, epigenome and genome.

Authors:  Young-Mi Go; Dean P Jones
Journal:  Redox Biol       Date:  2014-01-10       Impact factor: 11.799

10.  Glutathione peroxidase 4 and vitamin E cooperatively prevent hepatocellular degeneration.

Authors:  Bradley A Carlson; Ryuta Tobe; Elena Yefremova; Petra A Tsuji; Victoria J Hoffmann; Ulrich Schweizer; Vadim N Gladyshev; Dolph L Hatfield; Marcus Conrad
Journal:  Redox Biol       Date:  2016-05-26       Impact factor: 11.799

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  8 in total

1.  Understanding mixed environmental exposures using metabolomics via a hierarchical community network model in a cohort of California women in 1960's.

Authors:  Shuzhao Li; Piera Cirillo; Xin Hu; ViLinh Tran; Nickilou Krigbaum; Shaojun Yu; Dean P Jones; Barbara Cohn
Journal:  Reprod Toxicol       Date:  2019-07-09       Impact factor: 3.143

2.  Omics Integration for Mitochondria Systems Biology.

Authors:  Xin Hu; Young-Mi Go; Dean P Jones
Journal:  Antioxid Redox Signal       Date:  2020-02-03       Impact factor: 8.401

3.  Selenium Deficiency-Induced Pancreatic Pathology Is Associated with Oxidative Stress and Energy Metabolism Disequilibrium.

Authors:  Shuang Li; Qingyu Zhao; Kai Zhang; Wenjuan Sun; Jing Li; Xiaoqing Guo; Jingdong Yin; Junmin Zhang; Chaohua Tang
Journal:  Biol Trace Elem Res       Date:  2020-04-20       Impact factor: 3.738

4.  Protective Effect of Mitophagy Regulated by mTOR Signaling Pathway in Liver Fibrosis Associated with Selenium.

Authors:  Lichun Qiao; Ziwei Guo; Haobiao Liu; Jiaxin Liu; Xue Lin; Huan Deng; Xuan Liu; Yan Zhao; Xiang Xiao; Jian Lei; Jing Han
Journal:  Nutrients       Date:  2022-06-10       Impact factor: 6.706

Review 5.  Mechanisms Affecting the Biosynthesis and Incorporation Rate of Selenocysteine.

Authors:  Jing-Jing Peng; Shi-Yang Yue; Yu-Hui Fang; Xiao-Ling Liu; Cheng-Hua Wang
Journal:  Molecules       Date:  2021-11-25       Impact factor: 4.411

Review 6.  Selenium Analysis and Speciation in Dietary Supplements Based on Next-Generation Selenium Ingredients.

Authors:  Diana Constantinescu-Aruxandei; Rodica Mihaela Frîncu; Luiza Capră; Florin Oancea
Journal:  Nutrients       Date:  2018-10-09       Impact factor: 5.717

7.  Comparative proteomic analysis of pepper (Capsicum annuum L.) seedlings under selenium stress.

Authors:  Chenghao Zhang; Baoyu Xu; Wei Geng; Yunde Shen; Dongji Xuan; Qixian Lai; Chenjia Shen; Chengwu Jin; Chenliang Yu
Journal:  PeerJ       Date:  2019-11-27       Impact factor: 2.984

8.  Comparative de novo transcriptomics and untargeted metabolomic analyses elucidate complicated mechanisms regulating celery (Apium graveolens L.) responses to selenium stimuli.

Authors:  Chenghao Zhang; Baoyu Xu; Cheng-Ri Zhao; Junwei Sun; Qixian Lai; Chenliang Yu
Journal:  PLoS One       Date:  2019-12-30       Impact factor: 3.240

  8 in total

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