Literature DB >> 26730872

Metabolomics and Mycobacterial Disease: Don't Forget the Bioinformatics.

Jeffrey M Collins1, Russell R Kempker1, Thomas R Ziegler1, Henry M Blumberg1,2, Dean P Jones1.   

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Year:  2016        PMID： 26730872      PMCID： PMC5461983          DOI： 10.1513/AnnalsATS.201510-676LE

Source DB:  PubMed          Journal:  Ann Am Thorac Soc        ISSN： 2325-6621


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  6 in total

1.  Reference Standardization for Mass Spectrometry and High-resolution Metabolomics Applications to Exposome Research.

Authors:  Young-Mi Go; Douglas I Walker; Yongliang Liang; Karan Uppal; Quinlyn A Soltow; ViLinh Tran; Frederick Strobel; Arshed A Quyyumi; Thomas R Ziegler; Kurt D Pennell; Gary W Miller; Dean P Jones
Journal:  Toxicol Sci       Date:  2015-09-09       Impact factor: 4.849

Review 2.  Metabolomics: Applications and Promise in Mycobacterial Disease.

Authors:  Mehdi Mirsaeidi; Mohammad Mehdi Banoei; Brent W Winston; Dean E Schraufnagel
Journal:  Ann Am Thorac Soc       Date:  2015-09

3.  Plasma metabolomics in human pulmonary tuberculosis disease: a pilot study.

Authors:  Jennifer K Frediani; Dean P Jones; Nestan Tukvadze; Karan Uppal; Eka Sanikidze; Maia Kipiani; ViLinh T Tran; Gautam Hebbar; Douglas I Walker; Russell R Kempker; Shaheen S Kurani; Romain A Colas; Jesmond Dalli; Vin Tangpricha; Charles N Serhan; Henry M Blumberg; Thomas R Ziegler
Journal:  PLoS One       Date:  2014-10-15       Impact factor: 3.240

Review 4.  Bioinformatics: the next frontier of metabolomics.

Authors:  Caroline H Johnson; Julijana Ivanisevic; H Paul Benton; Gary Siuzdak
Journal:  Anal Chem       Date:  2014-11-20       Impact factor: 6.986

5.  xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data.

Authors:  Karan Uppal; Quinlyn A Soltow; Frederick H Strobel; W Stephen Pittard; Kim M Gernert; Tianwei Yu; Dean P Jones
Journal:  BMC Bioinformatics       Date:  2013-01-16       Impact factor: 3.169

6.  Predicting network activity from high throughput metabolomics.

Authors:  Shuzhao Li; Youngja Park; Sai Duraisingham; Frederick H Strobel; Nooruddin Khan; Quinlyn A Soltow; Dean P Jones; Bali Pulendran
Journal:  PLoS Comput Biol       Date:  2013-07-04       Impact factor: 4.475
  6 in total
  3 in total

1.  Tryptophan catabolism reflects disease activity in human tuberculosis.

Authors:  Jeffrey M Collins; Amnah Siddiqa; Dean P Jones; Ken Liu; Russell R Kempker; Azhar Nizam; N Sarita Shah; Nazir Ismail; Samuel G Ouma; Nestani Tukvadze; Shuzhao Li; Cheryl L Day; Jyothi Rengarajan; James Cm Brust; Neel R Gandhi; Joel D Ernst; Henry M Blumberg; Thomas R Ziegler
Journal:  JCI Insight       Date:  2020-05-21

2.  TCA cycle remodeling drives proinflammatory signaling in humans with pulmonary tuberculosis.

Authors:  Jeffrey M Collins; Dean P Jones; Ashish Sharma; Manoj Khadka; Ken H Liu; Russell R Kempker; Brendan Prideaux; Kristal Maner-Smith; Nestani Tukvadze; N Sarita Shah; James C M Brust; Rafick-Pierre Sékaly; Neel R Gandhi; Henry M Blumberg; Eric A Ortlund; Thomas R Ziegler
Journal:  PLoS Pathog       Date:  2021-09-24       Impact factor: 7.464

3.  High-resolution plasma metabolomics analysis to detect Mycobacterium tuberculosis-associated metabolites that distinguish active pulmonary tuberculosis in humans.

Authors:  Jeffrey M Collins; Douglas I Walker; Dean P Jones; Nestani Tukvadze; Ken H Liu; ViLinh T Tran; Karan Uppal; Jennifer K Frediani; Kirk A Easley; Neeta Shenvi; Manoj Khadka; Eric A Ortlund; Russell R Kempker; Henry M Blumberg; Thomas R Ziegler
Journal:  PLoS One       Date:  2018-10-11       Impact factor: 3.240
  3 in total

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