Literature DB >> 23955274

Conditional targeted genome editing using somatically expressed TALENs in C. elegans.

Ze Cheng1, Peishan Yi, Xiangming Wang, Yongping Chai, Guoxin Feng, Yihong Yang, Xing Liang, Zhiwen Zhu, Wei Li, Guangshuo Ou.   

Abstract

We have developed a method for the generation of conditional knockouts in Caenorhabditis elegans by expressing transcription activator-like effector nucleases (TALENs) in somatic cells. Using germline transformation with plasmids encoding TALENs under the control of an inducible or tissue-specific promoter, we observed effective gene modifications and resulting phenotypes in specific developmental stages and tissues. We further used this method to bypass the embryonic requirement of cor-1, which encodes the homolog of human severe combined immunodeficiency (SCID) protein coronin, and we determined its essential role in cell migration in larval Q-cell lineages. Our results show that TALENs expressed in the somatic cells of model organisms provide a versatile tool for functional genomics.

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Year:  2013        PMID: 23955274     DOI: 10.1038/nbt.2674

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  23 in total

1.  A toolset for the proficient geneticist.

Authors:  Erika Pastrana
Journal:  Nat Methods       Date:  2010-07       Impact factor: 28.547

2.  Requirement for coronin 1 in T lymphocyte trafficking and cellular homeostasis.

Authors:  Niko Föger; Linda Rangell; Dimitry M Danilenko; Andrew C Chan
Journal:  Science       Date:  2006-08-11       Impact factor: 47.728

3.  Migration and homeostasis of naive T cells depends on coronin 1-mediated prosurvival signals and not on coronin 1-dependent filamentous actin modulation.

Authors:  Philipp Mueller; Xiaolong Liu; Jean Pieters
Journal:  J Immunol       Date:  2011-02-21       Impact factor: 5.422

4.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

5.  Caenorhabditis elegans dpy-5 is a cuticle procollagen processed by a proprotein convertase.

Authors:  C Thacker; J A Sheps; A M Rose
Journal:  Cell Mol Life Sci       Date:  2006-05       Impact factor: 9.261

6.  Temporal and spatial expression patterns of the small heat shock (hsp16) genes in transgenic Caenorhabditis elegans.

Authors:  E G Stringham; D K Dixon; D Jones; E P Candido
Journal:  Mol Biol Cell       Date:  1992-02       Impact factor: 4.138

7.  Enhanced neuronal RNAi in C. elegans using SID-1.

Authors:  Andrea Calixto; Dattananda Chelur; Irini Topalidou; Xiaoyin Chen; Martin Chalfie
Journal:  Nat Methods       Date:  2010-05-30       Impact factor: 28.547

8.  A gene involved in the development of the posterior body region of C. elegans.

Authors:  C Kenyon
Journal:  Cell       Date:  1986-08-01       Impact factor: 41.582

9.  The actin regulator coronin 1A is mutant in a thymic egress-deficient mouse strain and in a patient with severe combined immunodeficiency.

Authors:  Lawrence R Shiow; David W Roadcap; Kenneth Paris; Susan R Watson; Irina L Grigorova; Tonya Lebet; Jinping An; Ying Xu; Craig N Jenne; Niko Föger; Ricardo U Sorensen; Christopher C Goodnow; James E Bear; Jennifer M Puck; Jason G Cyster
Journal:  Nat Immunol       Date:  2008-10-05       Impact factor: 25.606

10.  Gene activation using FLP recombinase in C. elegans.

Authors:  M Wayne Davis; J Jason Morton; Dana Carroll; Erik M Jorgensen
Journal:  PLoS Genet       Date:  2008-03-21       Impact factor: 5.917

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  15 in total

Review 1.  Exciting prospects for precise engineering of Caenorhabditis elegans genomes with CRISPR/Cas9.

Authors:  Christian Frøkjær-Jensen
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

2.  Heritable/conditional genome editing in C. elegans using a CRISPR-Cas9 feeding system.

Authors:  Pengpeng Liu; Lijiang Long; Kai Xiong; Bo Yu; Nannan Chang; Jing-Wei Xiong; Zuoyan Zhu; Dong Liu
Journal:  Cell Res       Date:  2014-05-30       Impact factor: 25.617

Review 3.  Utilization of TALEN and CRISPR/Cas9 technologies for gene targeting and modification.

Authors:  Jiali Pu; David Frescas; Baorong Zhang; Jian Feng
Journal:  Exp Biol Med (Maywood)       Date:  2015-05-07

Review 4.  The application of CRISPR-Cas9 genome editing in Caenorhabditis elegans.

Authors:  Suhong Xu
Journal:  J Genet Genomics       Date:  2015-06-26       Impact factor: 4.275

5.  Various applications of TALEN- and CRISPR/Cas9-mediated homologous recombination to modify the Drosophila genome.

Authors:  Zhongsheng Yu; Hanqing Chen; Jiyong Liu; Hongtao Zhang; Yan Yan; Nannan Zhu; Yawen Guo; Bo Yang; Yan Chang; Fei Dai; Xuehong Liang; Yixu Chen; Yan Shen; Wu-Min Deng; Jianming Chen; Bo Zhang; Changqing Li; Renjie Jiao
Journal:  Biol Open       Date:  2014-04-15       Impact factor: 2.422

6.  A conditional knockout toolkit for Caenorhabditis elegans based on the Cre/loxP recombination.

Authors:  Eriko Kage-Nakadai; Rieko Imae; Yuji Suehiro; Sawako Yoshina; Sayaka Hori; Shohei Mitani
Journal:  PLoS One       Date:  2014-12-04       Impact factor: 3.240

7.  Guangshuo Ou: New perspectives on Q cell biology.

Authors:  Guangshuo Ou; Caitlin Sedwick
Journal:  J Cell Biol       Date:  2014-10-27       Impact factor: 10.539

Review 8.  Genome Editing in C. elegans and Other Nematode Species.

Authors:  Takuma Sugi
Journal:  Int J Mol Sci       Date:  2016-02-26       Impact factor: 5.923

Review 9.  Genome-editing tools for stem cell biology.

Authors:  E A Vasileva; O U Shuvalov; A V Garabadgiu; G Melino; N A Barlev
Journal:  Cell Death Dis       Date:  2015-07-23       Impact factor: 8.469

10.  The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans.

Authors:  Liangyu Zhang; Jordan D Ward; Ze Cheng; Abby F Dernburg
Journal:  Development       Date:  2015-11-09       Impact factor: 6.868

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