Literature DB >> 26324916

Cysteine as a ligand platform in the biosynthesis of the FeFe hydrogenase H cluster.

Daniel L M Suess1, Ingmar Bürstel2, Liliana De La Paz2, Jon M Kuchenreuther1, Cindy C Pham1, Stephen P Cramer1, James R Swartz3, R David Britt4.   

Abstract

Hydrogenases catalyze the redox interconversion of protons and H2, an important reaction for a number of metabolic processes and for solar fuel production. In FeFe hydrogenases, catalysis occurs at the H cluster, a metallocofactor comprising a [4Fe-4S]H subcluster coupled to a [2Fe]H subcluster bound by CO, CN(-), and azadithiolate ligands. The [2Fe]H subcluster is assembled by the maturases HydE, HydF, and HydG. HydG is a member of the radical S-adenosyl-L-methionine family of enzymes that transforms Fe and L-tyrosine into an [Fe(CO)2(CN)] synthon that is incorporated into the H cluster. Although it is thought that the site of synthon formation in HydG is the "dangler" Fe of a [5Fe] cluster, many mechanistic aspects of this chemistry remain unresolved including the full ligand set of the synthon, how the dangler Fe initially binds to HydG, and how the synthon is released at the end of the reaction. To address these questions, we herein show that L-cysteine (Cys) binds the auxiliary [4Fe-4S] cluster of HydG and further chelates the dangler Fe. We also demonstrate that a [4Fe-4S]aux[CN] species is generated during HydG catalysis, a process that entails the loss of Cys and the [Fe(CO)2(CN)] fragment; on this basis, we suggest that Cys likely completes the coordination sphere of the synthon. Thus, through spectroscopic analysis of HydG before and after the synthon is formed, we conclude that Cys serves as the ligand platform on which the synthon is built and plays a role in both Fe(2+) binding and synthon release.

Entities:  

Keywords:  FeFe hydrogenase; HydG; metallocofactor biosynthesis

Mesh:

Substances:

Year:  2015        PMID: 26324916      PMCID: PMC4577183          DOI: 10.1073/pnas.1508440112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

Authors:  Stefan Stoll; Arthur Schweiger
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

2.  [FeFe]-hydrogenase cyanide ligands derived from S-adenosylmethionine-dependent cleavage of tyrosine.

Authors:  Rebecca C Driesener; Martin R Challand; Shawn E McGlynn; Eric M Shepard; Eric S Boyd; Joan B Broderick; John W Peters; Peter L Roach
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-22       Impact factor: 15.336

3.  HydF as a scaffold protein in [FeFe] hydrogenase H-cluster biosynthesis.

Authors:  Shawn E McGlynn; Eric M Shepard; Mark A Winslow; Anatoli V Naumov; Kaitlin S Duschene; Matthew C Posewitz; William E Broderick; Joan B Broderick; John W Peters
Journal:  FEBS Lett       Date:  2008-05-22       Impact factor: 4.124

4.  The HydG enzyme generates an Fe(CO)2(CN) synthon in assembly of the FeFe hydrogenase H-cluster.

Authors:  Jon M Kuchenreuther; William K Myers; Daniel L M Suess; Troy A Stich; Vladimir Pelmenschikov; Stacey A Shiigi; Stephen P Cramer; James R Swartz; R David Britt; Simon J George
Journal:  Science       Date:  2014-01-24       Impact factor: 47.728

Review 5.  Radical S-adenosylmethionine enzymes.

Authors:  Joan B Broderick; Benjamin R Duffus; Kaitlin S Duschene; Eric M Shepard
Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

6.  Mössbauer studies of beef heart aconitase: evidence for facile interconversions of iron-sulfur clusters.

Authors:  T A Kent; J L Dreyer; M C Kennedy; B H Huynh; M H Emptage; H Beinert; E Münck
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

7.  Crystal structure of HydG from Carboxydothermus hydrogenoformans: a trifunctional [FeFe]-hydrogenase maturase.

Authors:  Yvain Nicolet; Adrien Pagnier; Laura Zeppieri; Lydie Martin; Patricia Amara; Juan C Fontecilla-Camps
Journal:  Chembiochem       Date:  2014-12-10       Impact factor: 3.164

8.  X-ray crystallographic and EPR spectroscopic analysis of HydG, a maturase in [FeFe]-hydrogenase H-cluster assembly.

Authors:  Pedro Dinis; Daniel L M Suess; Stephen J Fox; Jenny E Harmer; Rebecca C Driesener; Liliana De La Paz; James R Swartz; Jonathan W Essex; R David Britt; Peter L Roach
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

Review 9.  Mössbauer spectroscopy of Fe/S proteins.

Authors:  Maria-Eirini Pandelia; Nicholas D Lanz; Squire J Booker; Carsten Krebs
Journal:  Biochim Biophys Acta       Date:  2014-12-10

10.  Nuclear resonance vibrational spectroscopy and electron paramagnetic resonance spectroscopy of 57Fe-enriched [FeFe] hydrogenase indicate stepwise assembly of the H-cluster.

Authors:  Jon M Kuchenreuther; Yisong Guo; Hongxin Wang; William K Myers; Simon J George; Christine A Boyke; Yoshitaka Yoda; E Ercan Alp; Jiyong Zhao; R David Britt; James R Swartz; Stephen P Cramer
Journal:  Biochemistry       Date:  2013-01-24       Impact factor: 3.162

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  25 in total

1.  Electron Paramagnetic Resonance Spectroscopic Identification of the Fe-S Clusters in the SPASM Domain-Containing Radical SAM Enzyme PqqE.

Authors:  Lizhi Tao; Wen Zhu; Judith P Klinman; R David Britt
Journal:  Biochemistry       Date:  2019-12-11       Impact factor: 3.162

2.  The final steps of [FeFe]-hydrogenase maturation.

Authors:  Oliver Lampret; Julian Esselborn; Rieke Haas; Andreas Rutz; Rosalind L Booth; Leonie Kertess; Florian Wittkamp; Clare F Megarity; Fraser A Armstrong; Martin Winkler; Thomas Happe
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-23       Impact factor: 11.205

3.  A Redox Active [2Fe-2S] Cluster on the Hydrogenase Maturase HydF.

Authors:  Eric M Shepard; Amanda S Byer; Jeremiah N Betz; John W Peters; Joan B Broderick
Journal:  Biochemistry       Date:  2016-06-14       Impact factor: 3.162

4.  The binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe(Cys)(CO)2(CN)] organometallic precursor.

Authors:  Guodong Rao; Scott A Pattenaude; Katherine Alwan; Ninian J Blackburn; R David Britt; Thomas B Rauchfuss
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

5.  CO and CN- syntheses by [FeFe]-hydrogenase maturase HydG are catalytically differentiated events.

Authors:  Adrien Pagnier; Lydie Martin; Laura Zeppieri; Yvain Nicolet; Juan C Fontecilla-Camps
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

6.  Direct Observation of an Iron-Bound Terminal Hydride in [FeFe]-Hydrogenase by Nuclear Resonance Vibrational Spectroscopy.

Authors:  Edward J Reijerse; Cindy C Pham; Vladimir Pelmenschikov; Ryan Gilbert-Wilson; Agnieszka Adamska-Venkatesh; Judith F Siebel; Leland B Gee; Yoshitaka Yoda; Kenji Tamasaku; Wolfgang Lubitz; Thomas B Rauchfuss; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2017-03-20       Impact factor: 15.419

7.  Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster.

Authors:  Lizhi Tao; Scott A Pattenaude; Sumedh Joshi; Tadhg P Begley; Thomas B Rauchfuss; R David Britt
Journal:  J Am Chem Soc       Date:  2020-06-03       Impact factor: 15.419

8.  Structural and functional characterization of the hydrogenase-maturation HydF protein.

Authors:  Giorgio Caserta; Ludovic Pecqueur; Agnieszka Adamska-Venkatesh; Cecilia Papini; Souvik Roy; Vincent Artero; Mohamed Atta; Edward Reijerse; Wolfgang Lubitz; Marc Fontecave
Journal:  Nat Chem Biol       Date:  2017-05-29       Impact factor: 15.040

Review 9.  Mechanism of Radical Initiation in the Radical S-Adenosyl-l-methionine Superfamily.

Authors:  William E Broderick; Brian M Hoffman; Joan B Broderick
Journal:  Acc Chem Res       Date:  2018-10-15       Impact factor: 22.384

10.  Biosynthesis of the [FeFe] Hydrogenase H Cluster: A Central Role for the Radical SAM Enzyme HydG.

Authors:  Daniel L M Suess; Jon M Kuchenreuther; Liliana De La Paz; James R Swartz; R David Britt
Journal:  Inorg Chem       Date:  2015-12-24       Impact factor: 5.165

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