Literature DB >> 25504963

Crystal structure of HydG from Carboxydothermus hydrogenoformans: a trifunctional [FeFe]-hydrogenase maturase.

Yvain Nicolet1, Adrien Pagnier, Laura Zeppieri, Lydie Martin, Patricia Amara, Juan C Fontecilla-Camps.   

Abstract

The structure of the radical S-adenosyl-L-methionine (SAM) [FeFe]-hydrogenase maturase HydG involved in CN(-) /CO synthesis is characterized by two internal tunnels connecting its tyrosine-binding pocket with the external medium and the C-terminal Fe4 S4 cluster-containing region. A comparison with a tryptophan-bound NosL structure suggests that substrate binding causes the closing of the first tunnel and, along with mutagenesis studies, that tyrosine binds to HydG with its amino group well positioned for H-abstraction by SAM. In this orientation the dehydroglycine (DHG) fragment caused by tyrosine Cα-Cβ bond scission can readily migrate through the second tunnel towards the C-terminal domain where both CN(-) and CO are synthesized. Our HydG structure appears to be in a relaxed state with its C-terminal cluster CysX2 CysX22 Cys motif exposed to solvent. A rotation of this domain coupled to Fe4 S4 cluster assembly would bury its putatively reactive unique Fe ion thereby allowing it to interact with DHG.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  CC bond cleavage; [FeFe]-hydrogenase maturasetyrosine lyase; radical SAM enzyme; radicals; reduction

Mesh:

Substances:

Year:  2014        PMID: 25504963     DOI: 10.1002/cbic.201402661

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  20 in total

1.  A Redox Active [2Fe-2S] Cluster on the Hydrogenase Maturase HydF.

Authors:  Eric M Shepard; Amanda S Byer; Jeremiah N Betz; John W Peters; Joan B Broderick
Journal:  Biochemistry       Date:  2016-06-14       Impact factor: 3.162

2.  CO and CN- syntheses by [FeFe]-hydrogenase maturase HydG are catalytically differentiated events.

Authors:  Adrien Pagnier; Lydie Martin; Laura Zeppieri; Yvain Nicolet; Juan C Fontecilla-Camps
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

Review 3.  Radical S-adenosyl-L-methionine chemistry in the synthesis of hydrogenase and nitrogenase metal cofactors.

Authors:  Amanda S Byer; Eric M Shepard; John W Peters; Joan B Broderick
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

Review 4.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

5.  Cysteine as a ligand platform in the biosynthesis of the FeFe hydrogenase H cluster.

Authors:  Daniel L M Suess; Ingmar Bürstel; Liliana De La Paz; Jon M Kuchenreuther; Cindy C Pham; Stephen P Cramer; James R Swartz; R David Britt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

6.  Biosynthesis of the [FeFe] Hydrogenase H Cluster: A Central Role for the Radical SAM Enzyme HydG.

Authors:  Daniel L M Suess; Jon M Kuchenreuther; Liliana De La Paz; James R Swartz; R David Britt
Journal:  Inorg Chem       Date:  2015-12-24       Impact factor: 5.165

7.  Photoinduced Electron Transfer in a Radical SAM Enzyme Generates an S-Adenosylmethionine Derived Methyl Radical.

Authors:  Hao Yang; Stella Impano; Eric M Shepard; Christopher D James; William E Broderick; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2019-09-26       Impact factor: 15.419

8.  EPR Spectroscopic Studies of [FeFe]-Hydrogenase Maturation.

Authors:  Daniel L M Suess; R David Britt
Journal:  Catal Letters       Date:  2015-07-30       Impact factor: 3.186

9.  Bioassembly of complex iron-sulfur enzymes: hydrogenases and nitrogenases.

Authors:  R David Britt; Guodong Rao; Lizhi Tao
Journal:  Nat Rev Chem       Date:  2020-07-22       Impact factor: 34.571

10.  HydG, the "dangler" iron, and catalytic production of free CO and CN-: implications for [FeFe]-hydrogenase maturation.

Authors:  Eric M Shepard; Stella Impano; Benjamin R Duffus; Adrien Pagnier; Kaitlin S Duschene; Jeremiah N Betz; Amanda S Byer; Amanda Galambas; Elizabeth C McDaniel; Hope Watts; Shawn E McGlynn; John W Peters; William E Broderick; Joan B Broderick
Journal:  Dalton Trans       Date:  2021-08-04       Impact factor: 4.569

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