Literature DB >> 27232385

A Redox Active [2Fe-2S] Cluster on the Hydrogenase Maturase HydF.

Eric M Shepard1, Amanda S Byer1, Jeremiah N Betz1, John W Peters1, Joan B Broderick1.   

Abstract

[FeFe]-hydrogenases are nature's most prolific hydrogen catalysts, excelling at facilely interconverting H2 and protons. The catalytic core common to all [FeFe]-hydrogenases is a complex metallocofactor, referred to as the H-cluster, which is composed of a standard [4Fe-4S] cluster linked through a bridging thiolate to a 2Fe subcluster harboring dithiomethylamine, carbon monoxide, and cyanide ligands. This 2Fe subcluster is synthesized and inserted into [FeFe]-hydrogenase by three maturase enzymes denoted HydE, HydF, and HydG. HydE and HydG are radical S-adenosylmethionine enzymes and synthesize the nonprotein ligands of the H-cluster. HydF is a GTPase that functions as a scaffold or carrier for 2Fe subcluster production. Herein, we utilize UV-visible, circular dichroism, and electron paramagnetic resonance spectroscopic studies to establish the existence of redox active [4Fe-4S] and [2Fe-2S] clusters bound to HydF. We have used spectroelectrochemical titrations to assign iron-sulfur cluster midpoint potentials, have shown that HydF purifies with a reduced [2Fe-2S] cluster in the absence of exogenous reducing agents, and have tracked iron-sulfur cluster spectroscopic changes with quaternary structural perturbations. Our results provide an important foundation for understanding the maturation process by defining the iron-sulfur cluster content of HydF prior to its interaction with HydE and HydG. We speculate that the [2Fe-2S] cluster of HydF either acts as a placeholder for HydG-derived Fe(CO)2CN species or serves as a scaffold for 2Fe subcluster assembly.

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Year:  2016        PMID: 27232385      PMCID: PMC5501864          DOI: 10.1021/acs.biochem.6b00528

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  62 in total

1.  Identification of variant molecules of Bacillus thermoproteolyticus ferredoxin: crystal structure reveals bound coenzyme A and an unexpected [3Fe-4S] cluster associated with a canonical [4Fe-4S] ligand motif.

Authors:  Tadayoshi Shirakawa; Yasuhiro Takahashi; Kei Wada; Junko Hirota; Toshifumi Takao; Daijiro Ohmori; Keiichi Fukuyama
Journal:  Biochemistry       Date:  2005-09-20       Impact factor: 3.162

2.  Formation, Properties, and Characterization of a Fully Reduced Fe(II)Fe(II) Form of Spinach (and Parsley) [2Fe-2S] Ferredoxin with the Macrocyclic Complex [Cr(15-aneN(4))(H(2)O)(2)](2+) as Reductant.

Authors:  Sang-Choul Im; Takamitsu Kohzuma; William McFarlane; Jacques Gaillard; A. Geoffrey Sykes
Journal:  Inorg Chem       Date:  1997-03-26       Impact factor: 5.165

3.  HydF as a scaffold protein in [FeFe] hydrogenase H-cluster biosynthesis.

Authors:  Shawn E McGlynn; Eric M Shepard; Mark A Winslow; Anatoli V Naumov; Kaitlin S Duschene; Matthew C Posewitz; William E Broderick; Joan B Broderick; John W Peters
Journal:  FEBS Lett       Date:  2008-05-22       Impact factor: 4.124

4.  Catalytic turnover of [FeFe]-hydrogenase based on single-molecule imaging.

Authors:  Christopher Madden; Michael D Vaughn; Ismael Díez-Pérez; Katherine A Brown; Paul W King; Devens Gust; Ana L Moore; Thomas A Moore
Journal:  J Am Chem Soc       Date:  2011-10-03       Impact factor: 15.419

5.  Electron spin relaxation of iron-sulphur proteins studied by microwave power saturation.

Authors:  H Rupp; K K Rao; D O Hall; R Cammack
Journal:  Biochim Biophys Acta       Date:  1978-12-20

6.  Infrared studies of the CO-inhibited form of the Fe-only hydrogenase from Clostridium pasteurianum I: examination of its light sensitivity at cryogenic temperatures.

Authors:  Zhujun Chen; Brian J Lemon; Shan Huang; Derrick J Swartz; John W Peters; Kimberly A Bagley
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

7.  Rapid colorimetric micromethod for the quantitation of complexed iron in biological samples.

Authors:  W W Fish
Journal:  Methods Enzymol       Date:  1988       Impact factor: 1.600

8.  Crystal structure of HydG from Carboxydothermus hydrogenoformans: a trifunctional [FeFe]-hydrogenase maturase.

Authors:  Yvain Nicolet; Adrien Pagnier; Laura Zeppieri; Lydie Martin; Patricia Amara; Juan C Fontecilla-Camps
Journal:  Chembiochem       Date:  2014-12-10       Impact factor: 3.164

9.  Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic system.

Authors:  Paul W King; Matthew C Posewitz; Maria L Ghirardi; Michael Seibert
Journal:  J Bacteriol       Date:  2006-03       Impact factor: 3.490

10.  An EPR/HYSCORE, Mössbauer, and resonance Raman study of the hydrogenase maturation enzyme HydF: a model for N-coordination to [4Fe-4S] clusters.

Authors:  Gustav Berggren; Ricardo Garcia-Serres; Xavier Brazzolotto; Martin Clemancey; Serge Gambarelli; Mohamed Atta; Jean-Marc Latour; Heather L Hernández; Sowmya Subramanian; Michael K Johnson; Marc Fontecave
Journal:  J Biol Inorg Chem       Date:  2013-11-17       Impact factor: 3.358

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  9 in total

1.  Electron-Rich, Diiron Bis(monothiolato) Carbonyls: C-S Bond Homolysis in a Mixed Valence Diiron Dithiolate.

Authors:  Qianli Li; Noémie Lalaoui; Toby J Woods; Thomas B Rauchfuss; Federica Arrigoni; Giuseppe Zampella
Journal:  Inorg Chem       Date:  2018-04-05       Impact factor: 5.165

2.  Radical S-adenosylmethionine maquette chemistry: Cx3Cx2C peptide coordinated redox active [4Fe-4S] clusters.

Authors:  Amanda Galambas; Jacquelyn Miller; Morgan Jones; Elizabeth McDaniel; Molly Lukes; Hope Watts; Valérie Copié; Joan B Broderick; Robert K Szilagyi; Eric M Shepard
Journal:  J Biol Inorg Chem       Date:  2019-09-05       Impact factor: 3.358

3.  Structural and functional characterization of the hydrogenase-maturation HydF protein.

Authors:  Giorgio Caserta; Ludovic Pecqueur; Agnieszka Adamska-Venkatesh; Cecilia Papini; Souvik Roy; Vincent Artero; Mohamed Atta; Edward Reijerse; Wolfgang Lubitz; Marc Fontecave
Journal:  Nat Chem Biol       Date:  2017-05-29       Impact factor: 15.040

4.  Iron-Sulfur Cluster States of the Hydrogenase Maturase HydF.

Authors:  Eric M Shepard; Amanda S Byer; Joan B Broderick
Journal:  Biochemistry       Date:  2017-08-30       Impact factor: 3.162

5.  H-cluster assembly intermediates built on HydF by the radical SAM enzymes HydE and HydG.

Authors:  Amanda S Byer; Eric M Shepard; Michael W Ratzloff; Jeremiah N Betz; Paul W King; William E Broderick; Joan B Broderick
Journal:  J Biol Inorg Chem       Date:  2019-09-06       Impact factor: 3.358

6.  Electron Spin Relaxation and Biochemical Characterization of the Hydrogenase Maturase HydF: Insights into [2Fe-2S] and [4Fe-4S] Cluster Communication and Hydrogenase Activation.

Authors:  Eric M Shepard; Amanda S Byer; Priyanka Aggarwal; Jeremiah N Betz; Anna G Scott; Krista A Shisler; Robert J Usselman; Gareth R Eaton; Sandra S Eaton; Joan B Broderick
Journal:  Biochemistry       Date:  2017-06-13       Impact factor: 3.162

7.  Identifying conformational changes with site-directed spin labeling reveals that the GTPase domain of HydF is a molecular switch.

Authors:  Laura Galazzo; Lorenzo Maso; Edith De Rosa; Marco Bortolus; Davide Doni; Laura Acquasaliente; Vincenzo De Filippis; Paola Costantini; Donatella Carbonera
Journal:  Sci Rep       Date:  2017-05-10       Impact factor: 4.379

Review 8.  Overview of the Maturation Machinery of the H-Cluster of [FeFe]-Hydrogenases with a Focus on HydF.

Authors:  Marco Bortolus; Paola Costantini; Davide Doni; Donatella Carbonera
Journal:  Int J Mol Sci       Date:  2018-10-11       Impact factor: 5.923

9.  HydG, the "dangler" iron, and catalytic production of free CO and CN-: implications for [FeFe]-hydrogenase maturation.

Authors:  Eric M Shepard; Stella Impano; Benjamin R Duffus; Adrien Pagnier; Kaitlin S Duschene; Jeremiah N Betz; Amanda S Byer; Amanda Galambas; Elizabeth C McDaniel; Hope Watts; Shawn E McGlynn; John W Peters; William E Broderick; Joan B Broderick
Journal:  Dalton Trans       Date:  2021-08-04       Impact factor: 4.569

  9 in total

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