Literature DB >> 26315428

BIOPHYSICS. Response to Comments on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".

Stephen D Fried1, Steven G Boxer2.   

Abstract

Natarajan et al. and Chen and Savidge comment that comparing the electric field in ketosteroid isomerase's (KSI's) active site to zero overestimates the catalytic effect of KSI's electric field because the reference reaction occurs in water, which itself exerts a sizable electrostatic field. To compensate, Natarajan et al. argue that additional catalytic weight arises from positioning of the general base, whereas Chen and Savidge propose a separate contribution from desolvation of the general base. We note that the former claim is not well supported by published results, and the latter claim is intriguing but lacks experimental basis. We also take the opportunity to clarify some of the more conceptually subtle aspects of electrostatic catalysis.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 26315428      PMCID: PMC5289113          DOI: 10.1126/science.aab1627

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  13 in total

1.  Iterative approach to computational enzyme design.

Authors:  Heidi K Privett; Gert Kiss; Toni M Lee; Rebecca Blomberg; Roberto A Chica; Leonard M Thomas; Donald Hilvert; Kendall N Houk; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-22       Impact factor: 11.205

2.  BIOPHYSICS. Comment on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".

Authors:  Aditya Natarajan; Filip Yabukarski; Vandana Lamba; Jason P Schwans; Fanny Sunden; Daniel Herschlag
Journal:  Science       Date:  2015-08-27       Impact factor: 47.728

Review 3.  Electrostatic basis for enzyme catalysis.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; Yun Xiang; Hanbin Liu; Mats H M Olsson
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Direct measurement of the protein response to an electrostatic perturbation that mimics the catalytic cycle in ketosteroid isomerase.

Authors:  Santosh Kumar Jha; Minbiao Ji; Kelly J Gaffney; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

5.  Alternative view of enzyme reactions.

Authors:  M J Dewar; D M Storch
Journal:  Proc Natl Acad Sci U S A       Date:  1985-04       Impact factor: 11.205

6.  Use of anion-aromatic interactions to position the general base in the ketosteroid isomerase active site.

Authors:  Jason P Schwans; Fanny Sunden; Jonathan K Lassila; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

7.  Extreme electric fields power catalysis in the active site of ketosteroid isomerase.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

8.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

9.  An aspartate and a water molecule mediate efficient acid-base catalysis in a tailored antibody pocket.

Authors:  Erik W Debler; Roger Müller; Donald Hilvert; Ian A Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-21       Impact factor: 11.205

10.  Experimental and computational mutagenesis to investigate the positioning of a general base within an enzyme active site.

Authors:  Jason P Schwans; Philip Hanoian; Benjamin J Lengerich; Fanny Sunden; Ana Gonzalez; Yingssu Tsai; Sharon Hammes-Schiffer; Daniel Herschlag
Journal:  Biochemistry       Date:  2014-04-09       Impact factor: 3.162

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  4 in total

Review 1.  Electric Fields and Enzyme Catalysis.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Annu Rev Biochem       Date:  2017-03-24       Impact factor: 23.643

2.  Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin.

Authors:  Xiya Lu; Victor Ovchinnikov; Darren Demapan; Daniel Roston; Qiang Cui
Journal:  Biochemistry       Date:  2017-03-01       Impact factor: 3.162

3.  Vibrational Stark Effects of Carbonyl Probes Applied to Reinterpret IR and Raman Data for Enzyme Inhibitors in Terms of Electric Fields at the Active Site.

Authors:  Samuel H Schneider; Steven G Boxer
Journal:  J Phys Chem B       Date:  2016-08-31       Impact factor: 2.991

4.  A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.

Authors:  Yufan Wu; Stephen D Fried; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2020-05-19       Impact factor: 15.419

  4 in total

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