Literature DB >> 21949360

Direct measurement of the protein response to an electrostatic perturbation that mimics the catalytic cycle in ketosteroid isomerase.

Santosh Kumar Jha1, Minbiao Ji, Kelly J Gaffney, Steven G Boxer.   

Abstract

Understanding how electric fields and their fluctuations in the active site of enzymes affect efficient catalysis represents a critical objective of biochemical research. We have directly measured the dynamics of the electric field in the active site of a highly proficient enzyme, Δ(5)-3-ketosteroid isomerase (KSI), in response to a sudden electrostatic perturbation that simulates the charge displacement that occurs along the KSI catalytic reaction coordinate. Photoexcitation of a fluorescent analog (coumarin 183) of the reaction intermediate mimics the change in charge distribution that occurs between the reactant and intermediate state in the steroid substrate of KSI. We measured the electrostatic response and angular dynamics of four probe dipoles in the enzyme active site by monitoring the time-resolved changes in the vibrational absorbance (IR) spectrum of a spectator thiocyanate moiety (a quantitative sensor of changes in electric field) placed at four different locations in and around the active site, using polarization-dependent transient vibrational Stark spectroscopy. The four different dipoles in the active site remain immobile and do not align to the changes in the substrate electric field. These results indicate that the active site of KSI is preorganized with respect to functionally relevant changes in electric fields.

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Year:  2011        PMID: 21949360      PMCID: PMC3189056          DOI: 10.1073/pnas.1113874108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

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Review 9.  How do enzymes work?

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  19 in total

1.  Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.

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2.  BIOPHYSICS. Response to Comments on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".

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Review 5.  Site-specific infrared probes of proteins.

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6.  Site-specific measurement of water dynamics in the substrate pocket of ketosteroid isomerase using time-resolved vibrational spectroscopy.

Authors:  Santosh Kumar Jha; Minbiao Ji; Kelly J Gaffney; Steven G Boxer
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7.  Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site.

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Review 8.  Fundamental challenges in mechanistic enzymology: progress toward understanding the rate enhancements of enzymes.

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10.  Calculation of vibrational shifts of nitrile probes in the active site of ketosteroid isomerase upon ligand binding.

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