Literature DB >> 3857576

Alternative view of enzyme reactions.

M J Dewar, D M Storch.   

Abstract

Since adsorption of the substrate in the active site of an enzyme can occur only if all solvent is squeezed out from between them, any reaction between them takes place in the absence of any intervening solvent--i.e., as it would in the gas phase. Recent work has shown that ionic reactions in the gas phase often differ greatly from analogous processes in solution. Therefore, current interpretations of enzyme reactions in terms of solution chemistry are misguided. The large rates and specificity of enzyme reactions may be due simply to elimination of the solvent. The cleavage of peptides by chymotrypsin and carboxypeptidase A can be interpreted satisfactorily in this way.

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Year:  1985        PMID: 3857576      PMCID: PMC397529          DOI: 10.1073/pnas.82.8.2225

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  6 in total

1.  Letter: On the mechanism of catalysis by carboxypeptidase A.

Authors:  R Breslow; D Wernick
Journal:  J Am Chem Soc       Date:  1976-01-07       Impact factor: 15.419

2.  [Mechanism for the condensation reaction of fatty-acid biosynthesis (author's transl)].

Authors:  K I Arnstadt; G Schindlbeck; F Lynen
Journal:  Eur J Biochem       Date:  1975-07-15

Review 3.  Proteinase-catalyzed synthesis of peptide bonds.

Authors:  J S Fruton
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1982

4.  Formation of active site thiol esters of CoA transferase and the dependence of catalysis on specific binding interactions.

Authors:  S A Moore; W P Jencks
Journal:  J Biol Chem       Date:  1982-09-25       Impact factor: 5.157

5.  Mechanism of action of serine proteases: tetrahedral intermediate and concerted proton transfer.

Authors:  M W Hunkapiller; M D Forgac; J H Richards
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

6.  Direct determination of the protonation states of aspartic acid-102 and histidine-57 in the tetrahedral intermediate of the serine proteases: neutron structure of trypsin.

Authors:  A A Kossiakoff; S A Spencer
Journal:  Biochemistry       Date:  1981-10-27       Impact factor: 3.162

  6 in total
  27 in total

1.  BIOPHYSICS. Response to Comments on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Science       Date:  2015-08-27       Impact factor: 47.728

Review 2.  Mechanisms and free energies of enzymatic reactions.

Authors:  Jiali Gao; Shuhua Ma; Dan T Major; Kwangho Nam; Jingzhi Pu; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Do ligand binding and solvent exclusion alter the electrostatic character within the oxyanion hole of an enzymatic active site?

Authors:  Paul A Sigala; Aaron T Fafarman; Patrick E Bogard; Steven G Boxer; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-09-14       Impact factor: 15.419

4.  Reversibility and efficiency in electrocatalytic energy conversion and lessons from enzymes.

Authors:  Fraser A Armstrong; Judy Hirst
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

5.  Grand canonical ensemble Monte Carlo simulation of the dCpG/proflavine crystal hydrate.

Authors:  H Resat; M Mezei
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Computer simulations of enzyme catalysis: finding out what has been optimized by evolution.

Authors:  A Warshel; J Florián
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  The physico-chemical "anatomy" of the tautomerization through the DPT of the biologically important pairs of hypoxanthine with DNA bases: QM and QTAIM perspectives.

Authors:  Ol'ha O Brovarets'; Roman O Zhurakivsky; Dmytro M Hovorun
Journal:  J Mol Model       Date:  2013-01-05       Impact factor: 1.810

8.  Switches of hydrogen bonds during ligand-protein association processes determine binding kinetics.

Authors:  Yu-ming M Huang; Myungshim Kang; Chia-en A Chang
Journal:  J Mol Recognit       Date:  2014-09       Impact factor: 2.137

9.  Enzymes work by solvation substitution rather than by desolvation.

Authors:  A Warshel; J Aqvist; S Creighton
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

10.  Catalyzed decomposition of urea. Molecular dynamics simulations of the binding of urea to urease.

Authors:  Guillermina Estiu; Kenneth M Merz
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

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