Literature DB >> 25236793

A bipedal DNA motor that travels back and forth between two DNA origami tiles.

Miran Liber1, Toma E Tomov, Roman Tsukanov, Yaron Berger, Eyal Nir.   

Abstract

In this work, the successful operation of a dynamic DNA device constructed from two DNA origami building blocks is reported. The device includes a bipedal walker that strides back and forth between the two origami tiles. Two different DNA origami tiles are first prepared separately; they are then joined together in a controlled manner by a set of DNA strands to form a stable track in high yield as confirmed by single-molecule fluorescence (SMF). Second, a bipedal DNA motor, initially attached to one of the two origami units and operated by sequential interaction with "fuel" and "antifuel" DNA strands, moves from one origami tile to another and then back again. The operational yield, measured by SMF, was similar to that of a motor operating on a similar track embedded in a single origami tile, confirming that the transfer across the junction from one tile to the other does not result in dissociation that is any more than that of steps on a single tile. These results demonstrate that moving parts can reliably travel from one origami unit to another, and it demonstrates the feasibility of dynamic DNA molecular machines that are made of more than a single origami building block. This study is a step toward the development of motors that can stride over micrometer distances.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  DNA nanotechnology; DNA origami; molecular machines; molecular motors; single-molecule fluorescence

Mesh:

Substances:

Year:  2014        PMID: 25236793     DOI: 10.1002/smll.201402028

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  8 in total

1.  The Effect of Basepair Mismatch on DNA Strand Displacement.

Authors:  D W Bo Broadwater; Harold D Kim
Journal:  Biophys J       Date:  2016-04-12       Impact factor: 4.033

2.  Tunable DNA Origami Motors Translocate Ballistically Over μm Distances at nm/s Speeds.

Authors:  Alisina Bazrafshan; Travis A Meyer; Hanquan Su; Joshua M Brockman; Aaron T Blanchard; Selma Piranej; Yuxin Duan; Yonggang Ke; Khalid Salaita
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-01       Impact factor: 15.336

3.  DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size.

Authors:  Dinesh C Khara; John S Schreck; Toma E Tomov; Yaron Berger; Thomas E Ouldridge; Jonathan P K Doye; Eyal Nir
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

4.  Direct Visualization of Walking Motions of Photocontrolled Nanomachine on the DNA Nanostructure.

Authors:  Yangyang Yang; Marisa A Goetzfried; Kumi Hidaka; Mingxu You; Weihong Tan; Hiroshi Sugiyama; Masayuki Endo
Journal:  Nano Lett       Date:  2015-09-03       Impact factor: 11.189

5.  Quantifying absolute addressability in DNA origami with molecular resolution.

Authors:  Maximilian T Strauss; Florian Schueder; Daniel Haas; Philipp C Nickels; Ralf Jungmann
Journal:  Nat Commun       Date:  2018-04-23       Impact factor: 14.919

Review 6.  Robotic DNA Nanostructures.

Authors:  Sami Nummelin; Boxuan Shen; Petteri Piskunen; Qing Liu; Mauri A Kostiainen; Veikko Linko
Journal:  ACS Synth Biol       Date:  2020-07-12       Impact factor: 5.110

Review 7.  Mechanical Flexibility of DNA: A Quintessential Tool for DNA Nanotechnology.

Authors:  Runjhun Saran; Yong Wang; Isaac T S Li
Journal:  Sensors (Basel)       Date:  2020-12-08       Impact factor: 3.576

Review 8.  DNA Walkers for Biosensing Development.

Authors:  Lu Song; Ying Zhuge; Xiaolei Zuo; Min Li; Fang Wang
Journal:  Adv Sci (Weinh)       Date:  2022-04-22       Impact factor: 17.521

  8 in total

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