Literature DB >> 26234369

Unraveling the complexity of protein backbone dynamics with combined (13)C and (15)N solid-state NMR relaxation measurements.

Jonathan M Lamley1, Matthew J Lougher, Hans Juergen Sass, Marco Rogowski, Stephan Grzesiek, Józef R Lewandowski.   

Abstract

Typically, protein dynamics involve a complex hierarchy of motions occurring on different time scales between conformations separated by a range of different energy barriers. NMR relaxation can in principle provide a site-specific picture of both the time scales and amplitudes of these motions, but independent relaxation rates sensitive to fluctuations in different time scale ranges are required to obtain a faithful representation of the underlying dynamic complexity. This is especially pertinent for relaxation measurements in the solid state, which report on dynamics in a broader window of time scales by more than 3 orders of magnitudes compared to solution NMR relaxation. To aid in unraveling the intricacies of biomolecular dynamics we introduce (13)C spin-lattice relaxation in the rotating frame (R1ρ) as a probe of backbone nanosecond-microsecond motions in proteins in the solid state. We present measurements of (13)C'R1ρ rates in fully protonated crystalline protein GB1 at 600 and 850 MHz (1)H Larmor frequencies and compare them to (13)C'R1, (15)N R1 and R1ρ measured under the same conditions. The addition of carbon relaxation data to the model free analysis of nitrogen relaxation data leads to greatly improved characterization of time scales of protein backbone motions, minimizing the occurrence of fitting artifacts that may be present when (15)N data is used alone. We also discuss how internal motions characterized by different time scales contribute to (15)N and (13)C relaxation rates in the solid state and solution state, leading to fundamental differences between them, as well as phenomena such as underestimation of picosecond-range motions in the solid state and nanosecond-range motions in solution.

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Year:  2015        PMID: 26234369     DOI: 10.1039/c5cp03484a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  15 in total

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5.  Intermolecular Interactions and Protein Dynamics by Solid-State NMR Spectroscopy.

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6.  Characterization of Protein-Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements.

Authors:  Carl Öster; Simone Kosol; Christoph Hartlmüller; Jonathan M Lamley; Dinu Iuga; Andres Oss; Mai-Liis Org; Kalju Vanatalu; Ago Samoson; Tobias Madl; Józef R Lewandowski
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7.  Solid-State NMR Provides Evidence for Small-Amplitude Slow Domain Motions in a Multispanning Transmembrane α-Helical Protein.

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Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

9.  Intermolecular Interactions and Protein Dynamics by Solid-State NMR Spectroscopy.

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Journal:  Angew Chem Int Ed Engl       Date:  2015-11-02       Impact factor: 15.336

10.  Cross-Correlated Relaxation of Dipolar Coupling and Chemical-Shift Anisotropy in Magic-Angle Spinning R1ρ NMR Measurements: Application to Protein Backbone Dynamics Measurements.

Authors:  Vilius Kurauskas; Emmanuelle Weber; Audrey Hessel; Isabel Ayala; Dominique Marion; Paul Schanda
Journal:  J Phys Chem B       Date:  2016-08-19       Impact factor: 2.991

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