Literature DB >> 27500976

Cross-Correlated Relaxation of Dipolar Coupling and Chemical-Shift Anisotropy in Magic-Angle Spinning R1ρ NMR Measurements: Application to Protein Backbone Dynamics Measurements.

Vilius Kurauskas1, Emmanuelle Weber1, Audrey Hessel1, Isabel Ayala1, Dominique Marion1, Paul Schanda1.   

Abstract

Transverse relaxation rate measurements in magic-angle spinning solid-state nuclear magnetic resonance provide information about molecular motions occurring on nanosecond-to-millisecond (ns-ms) time scales. The measurement of heteronuclear ((13)C, (15)N) relaxation rate constants in the presence of a spin-lock radiofrequency field (R1ρ relaxation) provides access to such motions, and an increasing number of studies involving R1ρ relaxation in proteins have been reported. However, two factors that influence the observed relaxation rate constants have so far been neglected, namely, (1) the role of CSA/dipolar cross-correlated relaxation (CCR) and (2) the impact of fast proton spin flips (i.e., proton spin diffusion and relaxation). We show that CSA/D CCR in R1ρ experiments is measurable and that the CCR rate constant depends on ns-ms motions; it can thus provide insight into dynamics. We find that proton spin diffusion attenuates this CCR due to its decoupling effect on the doublet components. For measurements of dynamics, the use of R1ρ rate constants has practical advantages over the use of CCR rates, and this article reveals factors that have so far been disregarded and which are important for accurate measurements and interpretation.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27500976      PMCID: PMC5010779          DOI: 10.1021/acs.jpcb.6b06129

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  26 in total

1.  Microsecond time scale mobility in a solid protein as studied by the 15N R(1rho) site-specific NMR relaxation rates.

Authors:  Alexey Krushelnitsky; Tatiana Zinkevich; Detlef Reichert; Veniamin Chevelkov; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-09-01       Impact factor: 15.419

2.  Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation.

Authors:  Nicolas Giraud; Martin Blackledge; Maurice Goldman; Anja Böckmann; Anne Lesage; François Penin; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

3.  Asymmetric doublets in MAS NMR: coherent and incoherent mechanisms.

Authors:  N R Skrynnikov
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

4.  Quantitative measurement of differential 15N-H(alpha/beta)T2 relaxation rates in a perdeuterated protein by MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Anne Diehl; Bernd Reif
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

5.  Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion.

Authors:  Paul Schanda; Matthias Huber; Jérôme Boisbouvier; Beat H Meier; Matthias Ernst
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-14       Impact factor: 15.336

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Quantifying conformational dynamics using solid-state R₁ρ experiments.

Authors:  Caitlin M Quinn; Ann E McDermott
Journal:  J Magn Reson       Date:  2012-05-29       Impact factor: 2.229

8.  Cross-correlated relaxation for the measurement of angles between tensorial interactions.

Authors:  B Reif; A Diener; M Hennig; M Maurer; C Griesinger
Journal:  J Magn Reson       Date:  2000-03       Impact factor: 2.229

9.  Amplitudes and time scales of picosecond-to-microsecond motion in proteins studied by solid-state NMR: a critical evaluation of experimental approaches and application to crystalline ubiquitin.

Authors:  Jens D Haller; Paul Schanda
Journal:  J Biomol NMR       Date:  2013-10-09       Impact factor: 2.835

Review 10.  Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

Authors:  Paul Schanda; Matthias Ernst
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

View more
  8 in total

1.  Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR.

Authors:  Dominique Marion; Diego F Gauto; Isabel Ayala; Karine Giandoreggio-Barranco; Paul Schanda
Journal:  Chemphyschem       Date:  2018-12-20       Impact factor: 3.102

Review 2.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

3.  Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.

Authors:  Matthew D Shannon; Theint Theint; Dwaipayan Mukhopadhyay; Krystyna Surewicz; Witold K Surewicz; Dominique Marion; Paul Schanda; Christopher P Jaroniec
Journal:  Chemphyschem       Date:  2018-11-07       Impact factor: 3.102

4.  Refocusing CSA during magic angle spinning rotating-frame relaxation experiments.

Authors:  Eric G Keeler; Keith J Fritzsching; Ann E McDermott
Journal:  J Magn Reson       Date:  2018-09-14       Impact factor: 2.229

5.  Molecular Dynamics Simulations of Macromolecular Crystals.

Authors:  David S Cerutti; David A Case
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-11-16

6.  Slow conformational exchange and overall rocking motion in ubiquitin protein crystals.

Authors:  Vilius Kurauskas; Sergei A Izmailov; Olga N Rogacheva; Audrey Hessel; Isabel Ayala; Joyce Woodhouse; Anastasya Shilova; Yi Xue; Tairan Yuwen; Nicolas Coquelle; Jacques-Philippe Colletier; Nikolai R Skrynnikov; Paul Schanda
Journal:  Nat Commun       Date:  2017-07-27       Impact factor: 14.919

7.  Microsecond motions probed by near-rotary-resonance R15N MAS NMR experiments: the model case of protein overall-rocking in crystals.

Authors:  Alexey Krushelnitsky; Diego Gauto; Diana C Rodriguez Camargo; Paul Schanda; Kay Saalwächter
Journal:  J Biomol NMR       Date:  2018-05-30       Impact factor: 2.835

8.  Large-Scale Conformational Changes of FhaC Provide Insights Into the Two-Partner Secretion Mechanism.

Authors:  Giuseppe Sicoli; Albert Konijnenberg; Jérémy Guérin; Steve Hessmann; Elise Del Nero; Oscar Hernandez-Alba; Sophie Lecher; Guillaume Rouaut; Linn Müggenburg; Hervé Vezin; Sarah Cianférani; Frank Sobott; Robert Schneider; Françoise Jacob-Dubuisson
Journal:  Front Mol Biosci       Date:  2022-07-22
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.