Literature DB >> 19709963

Spherical demons: fast diffeomorphic landmark-free surface registration.

B T Thomas Yeo1, Mert R Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, Polina Golland.   

Abstract

We present the Spherical Demons algorithm for registering two spherical images. By exploiting spherical vector spline interpolation theory, we show that a large class of regularizors for the modified Demons objective function can be efficiently approximated on the sphere using iterative smoothing. Based on one parameter subgroups of diffeomorphisms, the resulting registration is diffeomorphic and fast. The Spherical Demons algorithm can also be modified to register a given spherical image to a probabilistic atlas. We demonstrate two variants of the algorithm corresponding to warping the atlas or warping the subject. Registration of a cortical surface mesh to an atlas mesh, both with more than 160 k nodes requires less than 5 min when warping the atlas and less than 3 min when warping the subject on a Xeon 3.2 GHz single processor machine. This is comparable to the fastest nondiffeomorphic landmark-free surface registration algorithms. Furthermore, the accuracy of our method compares favorably to the popular FreeSurfer registration algorithm. We validate the technique in two different applications that use registration to transfer segmentation labels onto a new image 1) parcellation of in vivo cortical surfaces and 2) Brodmann area localization in ex vivo cortical surfaces.

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Year:  2009        PMID: 19709963      PMCID: PMC2862393          DOI: 10.1109/TMI.2009.2030797

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  45 in total

1.  Automated sulcal segmentation using watersheds on the cortical surface.

Authors:  Maryam E Rettmann; Xiao Han; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2002-02       Impact factor: 6.556

2.  Geodesic estimation for large deformation anatomical shape averaging and interpolation.

Authors:  Brian Avants; James C Gee
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

3.  Incorporating statistical measures of anatomical variability in atlas-to-subject registration for conformal brain radiotherapy.

Authors:  Olivier Commowick; Radu Stefanescu; Pierre Fillard; Vincent Arsigny; Nicholas Ayache; Xavier Pennec; Grégoire Malandain
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

4.  Transitive inverse-consistent manifold registration.

Authors:  Xiujuan Geng; Dinesh Kumar; Gary E Christensen
Journal:  Inf Process Med Imaging       Date:  2005

5.  Generalized surface flows for deformable registration and cortical matching.

Authors:  I Eckstein; A A Joshi; C C J Kuo; R Leahy; M Desbrun
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

6.  Non-parametric surface-based regularisation for building statistical shape models.

Authors:  Carole Twining; Rhodri Davies; Chris Taylor
Journal:  Inf Process Med Imaging       Date:  2007

7.  Automated extraction of the cortical sulci based on a supervised learning approach.

Authors:  Zhuowen Tu; Songfeng Zheng; Alan L Yuille; Allan L Reiss; Rebecca A Dutton; Agatha D Lee; Albert M Galaburda; Ivo Dinov; Paul M Thompson; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

8.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

9.  Inferring brain variability from diffeomorphic deformations of currents: an integrative approach.

Authors:  Stanley Durrleman; Xavier Pennec; Alain Trouvé; Paul Thompson; Nicholas Ayache
Journal:  Med Image Anal       Date:  2008-06-21       Impact factor: 8.545

10.  Cortical folding patterns and predicting cytoarchitecture.

Authors:  Bruce Fischl; Niranjini Rajendran; Evelina Busa; Jean Augustinack; Oliver Hinds; B T Thomas Yeo; Hartmut Mohlberg; Katrin Amunts; Karl Zilles
Journal:  Cereb Cortex       Date:  2007-12-12       Impact factor: 5.357

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  141 in total

1.  Parcellations and hemispheric asymmetries of human cerebral cortex analyzed on surface-based atlases.

Authors:  David C Van Essen; Matthew F Glasser; Donna L Dierker; John Harwell; Timothy Coalson
Journal:  Cereb Cortex       Date:  2011-11-02       Impact factor: 5.357

2.  Cortical parcellations of the macaque monkey analyzed on surface-based atlases.

Authors:  David C Van Essen; Matthew F Glasser; Donna L Dierker; John Harwell
Journal:  Cereb Cortex       Date:  2011-11-02       Impact factor: 5.357

3.  Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex.

Authors:  B T Thomas Yeo; Mert R Sabuncu; Tom Vercauteren; Daphne J Holt; Katrin Amunts; Karl Zilles; Polina Golland; Bruce Fischl
Journal:  IEEE Trans Med Imaging       Date:  2010-06-07       Impact factor: 10.048

4.  GRAM: A framework for geodesic registration on anatomical manifolds.

Authors:  Jihun Hamm; Dong Hye Ye; Ragini Verma; Christos Davatzikos
Journal:  Med Image Anal       Date:  2010-06-08       Impact factor: 8.545

5.  Reconstruction of four-dimensional computed tomography lung images by applying spatial and temporal anatomical constraints using a Bayesian model.

Authors:  Tiancheng He; Zhong Xue; Bin S Teh; Stephen T Wong
Journal:  J Med Imaging (Bellingham)       Date:  2015-05-13

6.  A novel approach to multiple anatomical shape analysis: Application to fetal ventriculomegaly.

Authors:  Oualid Benkarim; Gemma Piella; Islem Rekik; Nadine Hahner; Elisenda Eixarch; Dinggang Shen; Gang Li; Miguel Angel González Ballester; Gerard Sanroma
Journal:  Med Image Anal       Date:  2020-06-10       Impact factor: 8.545

7.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

8.  Conformal mapping via metric optimization with application for cortical label fusion.

Authors:  Yonggang Shi; Rongjie Lai; Arthur W Toga
Journal:  Inf Process Med Imaging       Date:  2013

9.  Validation of a nonrigid registration error detection algorithm using clinical MRI brain data.

Authors:  Ryan D Datteri; Yuan Liu; Pierre-Francois D'Haese; Benoit M Dawant
Journal:  IEEE Trans Med Imaging       Date:  2014-07-30       Impact factor: 10.048

10.  Localization of specific language pathways using diffusion-weighted imaging tractography for presurgical planning of children with intractable epilepsy.

Authors:  Jeong-Won Jeong; Eishi Asano; Csaba Juhász; Harry T Chugani
Journal:  Epilepsia       Date:  2014-12-08       Impact factor: 5.864

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