| Literature DB >> 26181208 |
Jian Yin1, Andrew T Fenley1, Niel M Henriksen1, Michael K Gilson1.
Abstract
Improving the capability of atomistic computer models to predict the thermodynamics of noncovalent binding is critical for successful structure-based drug design, and the accuracy of such calculations remains limited by nonoptimal force field parameters. Ideally, one would incorporate protein-ligand affinity data into force field parametrization, but this would be inefficient and costly. We now demonstrate that sensitivity analysis can be used to efficiently tune Lennard-Jones parameters of aqueous host-guest systems for increasingly accurate calculations of binding enthalpy. These results highlight the promise of a comprehensive use of calorimetric host-guest binding data, along with existing validation data sets, to improve force field parameters for the simulation of noncovalent binding, with the ultimate goal of making protein-ligand modeling more accurate and hence speeding drug discovery.Entities:
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Year: 2015 PMID: 26181208 PMCID: PMC4664157 DOI: 10.1021/acs.jpcb.5b04262
Source DB: PubMed Journal: J Phys Chem B ISSN: 1520-5207 Impact factor: 2.991