Literature DB >> 29140701

HYDROPHOBE Challenge: A Joint Experimental and Computational Study on the Host-Guest Binding of Hydrocarbons to Cucurbiturils, Allowing Explicit Evaluation of Guest Hydration Free-Energy Contributions.

Khaleel I Assaf1, Mara Florea1, Jens Antony2, Niel M Henriksen3, Jian Yin3, Andreas Hansen2, Zheng-Wang Qu2, Rebecca Sure2, Dieter Klapstein4, Michael K Gilson3, Stefan Grimme2, Werner M Nau1.   

Abstract

The host-guest complexation of hydrocarbons (22 guest molecules) with cucurbit[7]uril was investigated in aqueous solution using the indicator displacement strategy. The binding constants (103-109 M-1) increased with guest size, pointing to the hydrophobic effect and dispersion interactions as driving forces. The measured affinities provide unique benchmark data for the binding of neutral guest molecules. Consequently, a computational blind challenge, the HYDROPHOBE challenge, was conducted to allow a comparison with state-of-the-art computational methods for predicting host-guest affinity constants. In total, three quantum-chemical (QM) data sets and two explicit-solvent molecular dynamics (MD) submissions were received. When searching for sources of uncertainty in predicting the host-guest affinities, the experimentally known hydration energies of the investigated hydrocarbons were used to test the employed solvation models (explicit solvent for MD and COSMO-RS for QM). Good correlations were obtained for both solvation models, but a rather constant offset was observed for the COSMO data, by ca. +2 kcal mol-1, which was traced back to a required reference-state correction in the QM submissions (2.38 kcal mol-1). Introduction of the reference-state correction improved the predictive power of the QM methods, particularly for small hydrocarbons up to C5.

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Year:  2017        PMID: 29140701      PMCID: PMC6247792          DOI: 10.1021/acs.jpcb.7b09175

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  89 in total

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Authors:  Araz Jakalian; David B Jack; Christopher I Bayly
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2.  Free energy, entropy, and induced fit in host-guest recognition: calculations with the second-generation mining minima algorithm.

Authors:  Chia-En Chang; Michael K Gilson
Journal:  J Am Chem Soc       Date:  2004-10-13       Impact factor: 15.419

3.  Design of density functionals that are broadly accurate for thermochemistry, thermochemical kinetics, and nonbonded interactions.

Authors:  Yan Zhao; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2005-06-30       Impact factor: 2.781

4.  More chemistry in small spaces.

Authors:  Dariush Ajami; Julius Rebek
Journal:  Acc Chem Res       Date:  2012-05-10       Impact factor: 22.384

5.  Grid inhomogeneous solvation theory: hydration structure and thermodynamics of the miniature receptor cucurbit[7]uril.

Authors:  Crystal N Nguyen; Tom Kurtzman Young; Michael K Gilson
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

6.  Probing Interactions between Hydrocarbons and Auxiliary Guests inside Cucurbit[8]uril.

Authors:  Ramin Rabbani; Eric Masson
Journal:  Org Lett       Date:  2017-08-10       Impact factor: 6.005

7.  Supramolecular chemistry: receptors, catalysts, and carriers.

Authors:  J M Lehn
Journal:  Science       Date:  1985-02-22       Impact factor: 47.728

8.  Helical folding of alkanes in a self-assembled, cylindrical capsule.

Authors:  Alessandro Scarso; Laurent Trembleau; Julius Rebek
Journal:  J Am Chem Soc       Date:  2004-10-20       Impact factor: 15.419

Review 9.  Overview of the SAMPL5 host-guest challenge: Are we doing better?

Authors:  Jian Yin; Niel M Henriksen; David R Slochower; Michael R Shirts; Michael W Chiu; David L Mobley; Michael K Gilson
Journal:  J Comput Aided Mol Des       Date:  2016-09-22       Impact factor: 3.686

10.  Extraction of hydrophobic species into a water-soluble synthetic receptor.

Authors:  Richard J Hooley; Hillary J Van Anda; Julius Rebek
Journal:  J Am Chem Soc       Date:  2007-10-10       Impact factor: 15.419

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  10 in total

1.  Bind3P: Optimization of a Water Model Based on Host-Guest Binding Data.

Authors:  Jian Yin; Niel M Henriksen; Hari S Muddana; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2018-06-22       Impact factor: 6.006

2.  Triptycene Walled Glycoluril Trimer: Synthesis and Recognition Properties.

Authors:  Sandra Zebaze Ndendjio; Wenjin Liu; Nicolas Yvanez; Zihui Meng; Peter Y Zavalij; Lyle Isaacs
Journal:  New J Chem       Date:  2019-11-28       Impact factor: 3.591

Review 3.  Applications of Cucurbiturils in Medicinal Chemistry and Chemical Biology.

Authors:  Debapratim Das; Khaleel I Assaf; Werner M Nau
Journal:  Front Chem       Date:  2019-09-13       Impact factor: 5.221

4.  Modular supramolecular dimerization of optically tunable extended aryl viologens.

Authors:  Magdalena Olesińska; Guanglu Wu; Silvia Gómez-Coca; Daniel Antón-García; Istvan Szabó; Edina Rosta; Oren A Scherman
Journal:  Chem Sci       Date:  2019-08-12       Impact factor: 9.825

5.  Preparation, characterization, and biological activity study of thymoquinone-cucurbit[7]uril inclusion complex.

Authors:  Lubna Alrawashdeh; Khaleel I Assaf; Walhan Alshaer; Fadwa Odeh; Suhair A Bani-Atta
Journal:  RSC Adv       Date:  2022-01-12       Impact factor: 3.361

6.  Cucurbiturils mimicked by low polarizability solvents with pre-formed cavities: an empirical model to predict hydrocarbon selectivity.

Authors:  Md Nazimuddin; Héctor Barbero; Ramin Rabbani; Eric Masson
Journal:  Chem Sci       Date:  2022-03-21       Impact factor: 9.825

7.  The Role of Packing, Dispersion, Electrostatics, and Solvation in High-Affinity Complexes of Cucurbit[n]urils with Uncharged Polar Guests.

Authors:  Laura M Grimm; Sebastian Spicher; Boryslav Tkachenko; Peter R Schreiner; Stefan Grimme; Frank Biedermann
Journal:  Chemistry       Date:  2022-05-25       Impact factor: 5.020

8.  Preferential binding of unsaturated hydrocarbons in aryl-bisimidazolium·cucurbit[8]uril complexes furbishes evidence for small-molecule π-π interactions.

Authors:  Steven J Barrow; Khaleel I Assaf; Aniello Palma; Werner M Nau; Oren A Scherman
Journal:  Chem Sci       Date:  2019-10-17       Impact factor: 9.825

Review 9.  Probing Reversible Guest Binding with Hyperpolarized 129Xe-NMR: Characteristics and Applications for Cucurbit[n]urils.

Authors:  Jabadurai Jayapaul; Leif Schröder
Journal:  Molecules       Date:  2020-02-20       Impact factor: 4.411

10.  Sensory Perception of Non-Deuterated and Deuterated Organic Compounds.

Authors:  Tunga Salthammer; Friederike Monegel; Nicole Schulz; Erik Uhde; Stefan Grimme; Jakob Seibert; Uwe Hohm; Wolf-Ulrich Palm
Journal:  Chemistry       Date:  2020-12-07       Impact factor: 5.020

  10 in total

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