Literature DB >> 12116411

Derivation of class II force fields. VIII. Derivation of a general quantum mechanical force field for organic compounds.

Carl S. Ewig1, Rajiv Berry, Uri Dinur, Jörg-Rüdiger Hill, Ming-Jing Hwang, Haiying Li, Chris Liang, Jon Maple, Zhengwei Peng, Thomas P. Stockfisch, Thomas S. Thacher, Lisa Yan, Xiangshan Ni, Arnold T. Hagler.   

Abstract

A class II valence force field covering a broad range of organic molecules has been derived employing ab initio quantum mechanical "observables." The procedure includes selecting representative molecules and molecular structures, and systematically sampling their energy surfaces as described by energies and energy first and second derivatives with respect to molecular deformations. In this article the procedure for fitting the force field parameters to these energies and energy derivatives is briefly reviewed. The application of the methodology to the derivation of a class II quantum mechanical force field (QMFF) for 32 organic functional groups is then described. A training set of 400 molecules spanning the 32 functional groups was used to parameterize the force field. The molecular families comprising the functional groups and, within each family, the torsional angles used to sample different conformers, are described. The number of stationary points (equilibria and transition states) for these molecules is given for each functional group. This set contains 1324 stationary structures, with 718 minimum energy structures and 606 transition states. The quality of the fit to the quantum data is gauged based on the deviations between the ab initio and force field energies and energy derivatives. The accuracy with which the QMFF reproduces the ab initio molecular bond lengths, bond angles, torsional angles, vibrational frequencies, and conformational energies is then given for each functional group. Consistently good accuracy is found for these computed properties for the various types of molecules. This demonstrates that the methodology is broadly applicable for the derivation of force field parameters across widely differing types of molecular structures. Copyright 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1782-1800, 2001

Entities:  

Year:  2001        PMID: 12116411     DOI: 10.1002/jcc.1131

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  16 in total

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Authors:  A T Hagler
Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

Review 3.  Biomolecular force fields: where have we been, where are we now, where do we need to go and how do we get there?

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Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

4.  Toward Improved Force-Field Accuracy through Sensitivity Analysis of Host-Guest Binding Thermodynamics.

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6.  Quantum mechanical force fields for condensed phase molecular simulations.

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Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

7.  Application of Q2MM to predictions in stereoselective synthesis.

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Journal:  Chem Commun (Camb)       Date:  2018-07-24       Impact factor: 6.222

8.  Recent Developments and Applications of the CHARMM force fields.

Authors:  Xiao Zhu; Pedro E M Lopes; Alexander D Mackerell
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2011-06-28

9.  Dynamics of conserved waters in human Hsp90: implications for drug design.

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Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

10.  Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective.

Authors:  Anna Stachowicz; Marek Rogalski; Jacek Korchowiec
Journal:  J Mol Model       Date:  2013-02-08       Impact factor: 1.810

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