Literature DB >> 24912171

Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases.

Zarah Forsberg1, Alasdair K Mackenzie1, Morten Sørlie1, Åsmund K Røhr2, Ronny Helland3, Andrew S Arvai4, Gustav Vaaje-Kolstad1, Vincent G H Eijsink5.   

Abstract

For decades, the enzymatic conversion of cellulose was thought to rely on the synergistic action of hydrolytic enzymes, but recent work has shown that lytic polysaccharide monooxygenases (LPMOs) are important contributors to this process. We describe the structural and functional characterization of two functionally coupled cellulose-active LPMOs belonging to auxiliary activity family 10 (AA10) that commonly occur in cellulolytic bacteria. One of these LPMOs cleaves glycosidic bonds by oxidation of the C1 carbon, whereas the other can oxidize both C1 and C4. We thus demonstrate that C4 oxidation is not confined to fungal AA9-type LPMOs. X-ray crystallographic structures were obtained for the enzyme pair from Streptomyces coelicolor, solved at 1.3 Å (ScLPMO10B) and 1.5 Å (CelS2 or ScLPMO10C) resolution. Structural comparisons revealed differences in active site architecture that could relate to the ability to oxidize C4 (and that also seem to apply to AA9-type LPMOs). Despite variation in active site architecture, the two enzymes exhibited similar affinities for Cu(2+) (12-31 nM), redox potentials (242 and 251 mV), and electron paramagnetic resonance spectra, with only the latter clearly different from those of chitin-active AA10-type LPMOs. We conclude that substrate specificity depends not on copper site architecture, but rather on variation in substrate binding and orientation. During cellulose degradation, the members of this LPMO pair act in synergy, indicating different functional roles and providing a rationale for the abundance of these enzymes in biomass-degrading organisms.

Entities:  

Keywords:  CBM33; GH61

Mesh:

Substances:

Year:  2014        PMID: 24912171      PMCID: PMC4060697          DOI: 10.1073/pnas.1402771111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.

Authors:  Randy M Berka; Igor V Grigoriev; Robert Otillar; Asaf Salamov; Jane Grimwood; Ian Reid; Nadeeza Ishmael; Tricia John; Corinne Darmond; Marie-Claude Moisan; Bernard Henrissat; Pedro M Coutinho; Vincent Lombard; Donald O Natvig; Erika Lindquist; Jeremy Schmutz; Susan Lucas; Paul Harris; Justin Powlowski; Annie Bellemare; David Taylor; Gregory Butler; Ronald P de Vries; Iris E Allijn; Joost van den Brink; Sophia Ushinsky; Reginald Storms; Amy J Powell; Ian T Paulsen; Liam D H Elbourne; Scott E Baker; Jon Magnuson; Sylvie Laboissiere; A John Clutterbuck; Diego Martinez; Mark Wogulis; Alfredo Lopez de Leon; Michael W Rey; Adrian Tsang
Journal:  Nat Biotechnol       Date:  2011-10-02       Impact factor: 54.908

2.  Cleavage of cellulose by a CBM33 protein.

Authors:  Zarah Forsberg; Gustav Vaaje-Kolstad; Bjørge Westereng; Anne C Bunæs; Yngve Stenstrøm; Alasdair MacKenzie; Morten Sørlie; Svein J Horn; Vincent G H Eijsink
Journal:  Protein Sci       Date:  2011-08-08       Impact factor: 6.725

3.  Two genes encoding an endoglucanase and a cellulose-binding protein are clustered and co-regulated by a TTA codon in Streptomyces halstedii JM8.

Authors:  A L Garda; J M Fernández-Abalos; P Sánchez; A Ruiz-Arribas; R I Santamaría
Journal:  Biochem J       Date:  1997-06-01       Impact factor: 3.857

4.  Characterization of the chitinolytic machinery of Enterococcus faecalis V583 and high-resolution structure of its oxidative CBM33 enzyme.

Authors:  Gustav Vaaje-Kolstad; Liv Anette Bøhle; Sigrid Gåseidnes; Bjørn Dalhus; Magnar Bjørås; Geir Mathiesen; Vincent G H Eijsink
Journal:  J Mol Biol       Date:  2011-12-22       Impact factor: 5.469

5.  The catalytic mechanism of peptidylglycine alpha-hydroxylating monooxygenase investigated by computer simulation.

Authors:  Alejandro Crespo; Marcelo A Martí; Adrian E Roitberg; L Mario Amzel; Darío A Estrin
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

6.  Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.

Authors:  R Jason Quinlan; Matt D Sweeney; Leila Lo Leggio; Harm Otten; Jens-Christian N Poulsen; Katja Salomon Johansen; Kristian B R M Krogh; Christian Isak Jørgensen; Morten Tovborg; Annika Anthonsen; Theodora Tryfona; Clive P Walter; Paul Dupree; Feng Xu; Gideon J Davies; Paul H Walton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

7.  The copper active site of CBM33 polysaccharide oxygenases.

Authors:  Glyn R Hemsworth; Edward J Taylor; Robbert Q Kim; Rebecca C Gregory; Sally J Lewis; Johan P Turkenburg; Alison Parkin; Gideon J Davies; Paul H Walton
Journal:  J Am Chem Soc       Date:  2013-04-10       Impact factor: 15.419

8.  The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose.

Authors:  Bjørge Westereng; Takuya Ishida; Gustav Vaaje-Kolstad; Miao Wu; Vincent G H Eijsink; Kiyohiko Igarashi; Masahiro Samejima; Jerry Ståhlberg; Svein J Horn; Mats Sandgren
Journal:  PLoS One       Date:  2011-11-23       Impact factor: 3.240

9.  Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces.

Authors:  Taichi E Takasuka; Adam J Book; Gina R Lewin; Cameron R Currie; Brian G Fox
Journal:  Sci Rep       Date:  2013-01-07       Impact factor: 4.379

10.  A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides.

Authors:  Trine Isaksen; Bjørge Westereng; Finn L Aachmann; Jane W Agger; Daniel Kracher; Roman Kittl; Roland Ludwig; Dietmar Haltrich; Vincent G H Eijsink; Svein J Horn
Journal:  J Biol Chem       Date:  2013-12-09       Impact factor: 5.486

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  74 in total

1.  Recombinant Expression of Trichoderma reesei Cel61A in Pichia pastoris: Optimizing Yield and N-terminal Processing.

Authors:  Magali Tanghe; Barbara Danneels; Andrea Camattari; Anton Glieder; Isabel Vandenberghe; Bart Devreese; Ingeborg Stals; Tom Desmet
Journal:  Mol Biotechnol       Date:  2015-12       Impact factor: 2.695

2.  Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.

Authors:  Young-Woo Nam; Takanori Nihira; Takatoshi Arakawa; Yuka Saito; Motomitsu Kitaoka; Hiroyuki Nakai; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2015-06-03       Impact factor: 5.157

3.  The three-dimensional structure of the cellobiohydrolase Cel7A from Aspergillus fumigatus at 1.5 Å resolution.

Authors:  Olga V Moroz; Michelle Maranta; Tarana Shaghasi; Paul V Harris; Keith S Wilson; Gideon J Davies
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

4.  Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity.

Authors:  Anna S Borisova; Trine Isaksen; Maria Dimarogona; Abhishek A Kognole; Geir Mathiesen; Anikó Várnai; Åsmund K Røhr; Christina M Payne; Morten Sørlie; Mats Sandgren; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2015-07-15       Impact factor: 5.157

5.  Structural basis for the enhancement of virulence by viral spindles and their in vivo crystallization.

Authors:  Elaine Chiu; Marcel Hijnen; Richard D Bunker; Marion Boudes; Chitra Rajendran; Kaheina Aizel; Vincent Oliéric; Clemens Schulze-Briese; Wataru Mitsuhashi; Vivienne Young; Vernon K Ward; Max Bergoin; Peter Metcalf; Fasséli Coulibaly
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-18       Impact factor: 11.205

Review 6.  Physiological and Molecular Understanding of Bacterial Polysaccharide Monooxygenases.

Authors:  Marco Agostoni; John A Hangasky; Michael A Marletta
Journal:  Microbiol Mol Biol Rev       Date:  2017-06-28       Impact factor: 11.056

7.  The carbohydrate-binding module and linker of a modular lytic polysaccharide monooxygenase promote localized cellulose oxidation.

Authors:  Gaston Courtade; Zarah Forsberg; Ellinor B Heggset; Vincent G H Eijsink; Finn L Aachmann
Journal:  J Biol Chem       Date:  2018-07-02       Impact factor: 5.157

8.  Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2.

Authors:  Bastien Bissaro; Åsmund K Røhr; Gerdt Müller; Piotr Chylenski; Morten Skaugen; Zarah Forsberg; Svein J Horn; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Nat Chem Biol       Date:  2017-08-28       Impact factor: 15.040

9.  Structural determinants of bacterial lytic polysaccharide monooxygenase functionality.

Authors:  Zarah Forsberg; Bastien Bissaro; Jonathan Gullesen; Bjørn Dalhus; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2017-12-08       Impact factor: 5.157

10.  Heterogeneity in the Histidine-brace Copper Coordination Sphere in Auxiliary Activity Family 10 (AA10) Lytic Polysaccharide Monooxygenases.

Authors:  Amanda K Chaplin; Michael T Wilson; Michael A Hough; Dimitri A Svistunenko; Glyn R Hemsworth; Paul H Walton; Erik Vijgenboom; Jonathan A R Worrall
Journal:  J Biol Chem       Date:  2016-04-15       Impact factor: 5.157

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