Literature DB >> 26177684

What happens at or after transcription: Insights into circRNA biogenesis and function.

Chuan Huang1, Ge Shan1.   

Abstract

Circular RNAs (circRNAs) are a large family of noncoding RNAs (ncRNAs) found in metazoans. Systematic studies of circRNAs have just begun. Here, we discuss circRNA biogenesis and functions with a focus on studies indicating great diversification of circRNAs. We highlight the recent identification of a special subtype of circRNAs, called EIciRNAs, and their role in transcriptional regulation. New insights on RNA-RNA interaction and other features associated with circRNA biology are also discussed.

Keywords:  biogenesis; circular RNA; exon-intron circular RNA; microRNA sponge; transcriptional regulation

Mesh:

Substances:

Year:  2015        PMID: 26177684      PMCID: PMC4802811          DOI: 10.1080/21541264.2015.1071301

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  36 in total

1.  U1 snRNA associates with TFIIH and regulates transcriptional initiation.

Authors:  Kon Yew Kwek; Shona Murphy; Andre Furger; Benjamin Thomas; William O'Gorman; Hiroshi Kimura; Nick J Proudfoot; Alexandre Akoulitchev
Journal:  Nat Struct Biol       Date:  2002-11

2.  The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock.

Authors:  Tiffany A Allen; Sandra Von Kaenel; James A Goodrich; Jennifer F Kugel
Journal:  Nat Struct Mol Biol       Date:  2004-08-08       Impact factor: 15.369

3.  A small modulatory dsRNA specifies the fate of adult neural stem cells.

Authors:  Tomoko Kuwabara; Jenny Hsieh; Kinichi Nakashima; Kazunari Taira; Fred H Gage
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

Review 4.  Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors.

Authors:  David L Bentley
Journal:  Curr Opin Cell Biol       Date:  2005-06       Impact factor: 8.382

Review 5.  Non-coding-RNA regulators of RNA polymerase II transcription.

Authors:  James A Goodrich; Jennifer F Kugel
Journal:  Nat Rev Mol Cell Biol       Date:  2006-05-24       Impact factor: 94.444

Review 6.  Pre-mRNA processing reaches back to transcription and ahead to translation.

Authors:  Melissa J Moore; Nick J Proudfoot
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

7.  Substrate recognition and catalysis by the exoribonuclease RNase R.

Authors:  Helen A Vincent; Murray P Deutscher
Journal:  J Biol Chem       Date:  2006-08-07       Impact factor: 5.157

8.  The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription.

Authors:  Z Yang; Q Zhu; K Luo; Q Zhou
Journal:  Nature       Date:  2001-11-15       Impact factor: 49.962

9.  Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.

Authors:  Hitoshi Suzuki; Yuhong Zuo; Jinhua Wang; Michael Q Zhang; Arun Malhotra; Akila Mayeda
Journal:  Nucleic Acids Res       Date:  2006-05-08       Impact factor: 16.971

10.  B2 RNA binds directly to RNA polymerase II to repress transcript synthesis.

Authors:  Celso A Espinoza; Tiffany A Allen; Aaron R Hieb; Jennifer F Kugel; James A Goodrich
Journal:  Nat Struct Mol Biol       Date:  2004-08-08       Impact factor: 15.369

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  46 in total

1.  Overexpression of circARF3 mitigates TNF-α-induced inflammatory damage by up-regulating miR-125b.

Authors:  Yingying Zhang; Binghui Hou; Chunxiao Li; Hong Li
Journal:  Cell Cycle       Date:  2020-04-24       Impact factor: 4.534

Review 2.  The nuclear export of circular RNAs is primarily defined by their length.

Authors:  Zhengguo Li; Michael G Kearse; Chuan Huang
Journal:  RNA Biol       Date:  2018-12-17       Impact factor: 4.652

Review 3.  Functions of long noncoding RNAs in the nucleus.

Authors:  Bin Yu; Ge Shan
Journal:  Nucleus       Date:  2016-04-25       Impact factor: 4.197

Review 4.  Regulatory Role of Circular RNAs and Neurological Disorders.

Authors:  Gabriele Floris; Longbin Zhang; Paolo Follesa; Tao Sun
Journal:  Mol Neurobiol       Date:  2016-08-24       Impact factor: 5.590

Review 5.  Circular RNAs-one of the enigmas of the brain.

Authors:  Ivan B Filippenkov; Eugene O Kalinichenko; Svetlana A Limborska; Lyudmila V Dergunova
Journal:  Neurogenetics       Date:  2016-07-23       Impact factor: 2.660

6.  Silencing hsa_circRNA_0008035 exerted repressive function on osteosarcoma cell growth and migration by upregulating microRNA-375.

Authors:  Gu Gong; Zhifeng Han; Wenjun Wang; Qinli Xu; Jingzhe Zhang
Journal:  Cell Cycle       Date:  2020-08-11       Impact factor: 4.534

Review 7.  New progresses of circular RNA biology: from nuclear export to degradation.

Authors:  Min Zhou; Mei-Sheng Xiao; Zhengguo Li; Chuan Huang
Journal:  RNA Biol       Date:  2020-12-09       Impact factor: 4.652

Review 8.  Research progress of circRNA as a biomarker of sepsis: a narrative review.

Authors:  Lei Qi; Yan Yan; Bairong Chen; Jiling Cao; Guiwen Liang; Pan Xu; Yue Wang; Yuting Ren; Guomin Mao; Zhongwei Huang; Cheng Xu; Haiyan Jiang
Journal:  Ann Transl Med       Date:  2021-04

9.  Expression profiles of circular RNAs in colon biopsies from Crohn's disease patients by microarray analysis.

Authors:  Yu-An Hu; Yan Zhu; Guorui Liu; Xinyue Yao; Xiaoling Yan; Yang Yang; Weiping Wang; Xiaoping Zou; Xiaojun Li
Journal:  J Clin Lab Anal       Date:  2021-05-06       Impact factor: 2.352

10.  Antisense oligonucleotide technology can be used to investigate a circular but not linear RNA-mediated function for its encoded gene locus.

Authors:  Zhenxing Song; Ruirui Jia; Mingfeng Tang; Fei Xia; Haiyang Xu; Zhengguo Li; Chuan Huang
Journal:  Sci China Life Sci       Date:  2020-08-17       Impact factor: 6.038

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