Literature DB >> 27449796

Circular RNAs-one of the enigmas of the brain.

Ivan B Filippenkov1, Eugene O Kalinichenko2, Svetlana A Limborska2,3, Lyudmila V Dergunova2,3.   

Abstract

Circular RNAs (circRNAs) provide a new and relatively unexplored class of noncoding RNAs that are predominantly found in mammalian cells. In this review, we present the latest data regarding the structural organization, possible mechanisms of synthesis, and functions of circRNAs. These transcripts were isolated as an RNA fraction that was resistant to RNase R treatment, which selectively destroys the linear forms of RNA molecules. circRNAs are encoded by orthologous genes in different organisms and show tissue- and organ-specific expression. Currently, the biogenesis and functional properties of circRNAs remain unclear; transcripts of this class, however, remain highly promising targets of research. Some of them have been ascribed the function of "molecular sponges" that can absorb microRNAs, RNA-binding proteins, and small nuclear RNAs. circRNAs are often formed from the RNA portions of protein-coding genes in the course of alternative splicing. Some features of the circRNAs of mammals were demonstrated using 11 circRNAs of the human sphingomyelin synthase 1 gene (SGMS1), which were discovered by us in the brain. These circRNAs consist mainly of portions of the multi-exon 5' untranslated region (5'UTR) of the SGMS1 gene and include one to five exons. The synthesis of circRNAs may be new, previously unknown, function of the multi-exon 5'UTR of genes. This feature is most clearly manifested in the brain, where the level of circRNAs is significantly higher.

Entities:  

Keywords:  Circular RNAs; Inverted repeats; Multi-exon 5′UTR; Sphingomyelin synthase 1 gene; Tissue-specific expression; microRNA

Mesh:

Substances:

Year:  2016        PMID: 27449796     DOI: 10.1007/s10048-016-0490-4

Source DB:  PubMed          Journal:  Neurogenetics        ISSN: 1364-6745            Impact factor:   2.660


  48 in total

1.  Repetitive elements regulate circular RNA biogenesis.

Authors:  Jeremy E Wilusz
Journal:  Mob Genet Elements       Date:  2015-05-21

2.  [Alternative promoters localised in SGMS1 gene introns take part in regulation of its expression in human tissues].

Authors:  A V Rozhkova; I B Filippenkov; O Yu Sudarkina; S A Limborska; L V Dergunova
Journal:  Mol Biol (Mosk)       Date:  2015 Mar-Apr

3.  Competitive endogenous RNAs cannot alter microRNA function in vivo.

Authors:  Jennifer A Broderick; Phillip D Zamore
Journal:  Mol Cell       Date:  2014-06-05       Impact factor: 17.970

4.  Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.

Authors:  Agnieszka Rybak-Wolf; Christin Stottmeister; Petar Glažar; Marvin Jens; Natalia Pino; Sebastian Giusti; Mor Hanan; Mikaela Behm; Osnat Bartok; Reut Ashwal-Fluss; Margareta Herzog; Luisa Schreyer; Panagiotis Papavasileiou; Andranik Ivanov; Marie Öhman; Damian Refojo; Sebastian Kadener; Nikolaus Rajewsky
Journal:  Mol Cell       Date:  2015-04-23       Impact factor: 17.970

5.  Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance.

Authors:  Rémy Denzler; Vikram Agarwal; Joanna Stefano; David P Bartel; Markus Stoffel
Journal:  Mol Cell       Date:  2014-05-01       Impact factor: 17.970

6.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

7.  Circular RNAs are a large class of animal RNAs with regulatory potency.

Authors:  Sebastian Memczak; Marvin Jens; Antigoni Elefsinioti; Francesca Torti; Janna Krueger; Agnieszka Rybak; Luisa Maier; Sebastian D Mackowiak; Lea H Gregersen; Mathias Munschauer; Alexander Loewer; Ulrike Ziebold; Markus Landthaler; Christine Kocks; Ferdinand le Noble; Nikolaus Rajewsky
Journal:  Nature       Date:  2013-02-27       Impact factor: 49.962

8.  Circular intronic long noncoding RNAs.

Authors:  Yang Zhang; Xiao-Ou Zhang; Tian Chen; Jian-Feng Xiang; Qing-Fei Yin; Yu-Hang Xing; Shanshan Zhu; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

9.  Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.

Authors:  Hitoshi Suzuki; Yuhong Zuo; Jinhua Wang; Michael Q Zhang; Arun Malhotra; Akila Mayeda
Journal:  Nucleic Acids Res       Date:  2006-05-08       Impact factor: 16.971

10.  The human brain in numbers: a linearly scaled-up primate brain.

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Journal:  Front Hum Neurosci       Date:  2009-11-09       Impact factor: 3.169

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  9 in total

Review 1.  Circular RNAs: Functions and Prospects in Glioma.

Authors:  Zheng Hao; Si Hu; Zheng Liu; Weixin Song; Yeyu Zhao; Meihua Li
Journal:  J Mol Neurosci       Date:  2018-11-20       Impact factor: 3.444

2.  CircOAS3 Regulates Keratinocyte Proliferation and Psoriatic Inflammation by Interacting with Hsc70 via the JNK/STAT3/NF-κB Signaling Pathway.

Authors:  Zhenxian Yang; Xiran Yin; Cheng Chen; Shan Huang; Xueqing Li; Jianjun Yan; Qing Sun
Journal:  Inflammation       Date:  2022-03-21       Impact factor: 4.657

Review 3.  Noncoding RNAs in neurodegeneration.

Authors:  Evgenia Salta; Bart De Strooper
Journal:  Nat Rev Neurosci       Date:  2017-08-17       Impact factor: 34.870

4.  Deficiency in the Ubiquitin Conjugating Enzyme UBE2A in Alzheimer's Disease (AD) is Linked to Deficits in a Natural Circular miRNA-7 Sponge (circRNA; ciRS-7).

Authors:  Yuhai Zhao; Peter N Alexandrov; Vivian Jaber; Walter J Lukiw
Journal:  Genes (Basel)       Date:  2016-12-05       Impact factor: 4.096

Review 5.  Circular RNAs: A Novel Player in Development and Disease of the Central Nervous System.

Authors:  Lili Xie; Mao Mao; Kun Xiong; Bing Jiang
Journal:  Front Cell Neurosci       Date:  2017-11-08       Impact factor: 5.505

6.  Circular RNA 0001313 Knockdown Suppresses Non-Small Cell Lung Cancer Cell Proliferation and Invasion via the microRNA-452/HMGB3/ERK/MAPK Axis.

Authors:  Shihao Zhang; Jiansheng Liu; Taiwen Yuan; Huiyu Liu; Chengwei Wan; Yonghong Le
Journal:  Int J Gen Med       Date:  2020-12-10

7.  First Genome of Rock Lizard Darevskia valentini Involved in Formation of Several Parthenogenetic Species.

Authors:  Sofia Ochkalova; Vitaly Korchagin; Andrey Vergun; Avel Urin; Danil Zilov; Sergei Ryakhovsky; Anastasiya Girnyk; Irena Martirosyan; Daria V Zhernakova; Marine Arakelyan; Felix Danielyan; Sergei Kliver; Vladimir Brukhin; Aleksey Komissarov; Alexey Ryskov
Journal:  Genes (Basel)       Date:  2022-09-01       Impact factor: 4.141

Review 8.  Genomic Variants and Multilevel Regulation of ABCA1, ABCG1, and SCARB1 Expression in Atherogenesis.

Authors:  Alexandra V Rozhkova; Veronika G Dmitrieva; Elena V Nosova; Alexander D Dergunov; Svetlana A Limborska; Liudmila V Dergunova
Journal:  J Cardiovasc Dev Dis       Date:  2021-12-02

Review 9.  Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability.

Authors:  Ruicheng Yang; Bojie Xu; Bo Yang; Jiyang Fu; Huanchun Chen; Xiangru Wang
Journal:  RNA Biol       Date:  2021-07-20       Impact factor: 4.652

  9 in total

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