Literature DB >> 30317559

Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs.

Xian Fu1, Ana Crnković1, Anastasia Sevostyanova1, Dieter Söll1,2.   

Abstract

Selenocysteine (Sec) lacks a cognate aminoacyl-tRNA synthetase. Instead, seryl-tRNA synthetase (SerRS) produces Ser-tRNAS ec , which is subsequently converted by selenocysteine synthase to Sec-tRNAS ec . Escherichia coli SerRS serylates tRNAS ec poorly; this may hinder efficient production of designer selenoproteins in vivo. Guided by structural modelling and selection for chloramphenicol acetyltransferase activity, we evolved three SerRS variants capable of improved Ser-tRNAS ec synthesis. They display 10-, 8-, and 4-fold increased kcat /KM values compared to wild-type SerRS using synthetic tRNAS ec species as substrates. The enzyme variants also facilitate in vivo read-through of a UAG codon in the position of the critical serine146 of chloramphenicol acetyltransferase. These results indicate that the naturally evolved SerRS is capable of further evolution for increased recognition of a specific tRNA isoacceptor.
© 2018 Federation of European Biochemical Societies.

Entities:  

Keywords:  zzm321990tRNAzzm321990; protein engineering; selenoproteins; seryl-tRNA synthetase; synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 30317559      PMCID: PMC6263840          DOI: 10.1002/1873-3468.13271

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  37 in total

1.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

Authors:  K A Datsenko; B L Wanner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 2.  Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.

Authors:  G Eggertsson; D Söll
Journal:  Microbiol Rev       Date:  1988-09

3.  Accuracy of in vivo aminoacylation requires proper balance of tRNA and aminoacyl-tRNA synthetase.

Authors:  R Swanson; P Hoben; M Sumner-Smith; H Uemura; L Watson; D Söll
Journal:  Science       Date:  1988-12-16       Impact factor: 47.728

4.  Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 A resolution.

Authors:  M Fujinaga; C Berthet-Colominas; A D Yaremchuk; M A Tukalo; S Cusack
Journal:  J Mol Biol       Date:  1993-11-05       Impact factor: 5.469

5.  Evolving tRNA(Sec) for efficient canonical incorporation of selenocysteine.

Authors:  Ross Thyer; Scott A Robotham; Jennifer S Brodbelt; Andrew D Ellington
Journal:  J Am Chem Soc       Date:  2014-12-23       Impact factor: 15.419

6.  A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro.

Authors:  Corwin Miller; Markus J Bröcker; Laure Prat; Kevan Ip; Napon Chirathivat; Alexander Feiock; Miklós Veszprémi; Dieter Söll
Journal:  FEBS Lett       Date:  2015-07-06       Impact factor: 4.124

7.  Transfer RNA mischarging mediated by a mutant Escherichia coli glutaminyl-tRNA synthetase.

Authors:  H Inokuchi; P Hoben; F Yamao; H Ozeki; D Söll
Journal:  Proc Natl Acad Sci U S A       Date:  1984-08       Impact factor: 11.205

8.  Selenocysteine.

Authors:  A Böck; M Thanbichler
Journal:  EcoSal Plus       Date:  2004-12

9.  Seryl-tRNA synthetase from Escherichia coli: implication of its N-terminal domain in aminoacylation activity and specificity.

Authors:  F Borel; C Vincent; R Leberman; M Härtlein
Journal:  Nucleic Acids Res       Date:  1994-08-11       Impact factor: 16.971

10.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

View more
  3 in total

Review 1.  Plasticity and Constraints of tRNA Aminoacylation Define Directed Evolution of Aminoacyl-tRNA Synthetases.

Authors:  Ana Crnković; Oscar Vargas-Rodriguez; Dieter Söll
Journal:  Int J Mol Sci       Date:  2019-05-09       Impact factor: 5.923

Review 2.  Naturally Occurring tRNAs With Non-canonical Structures.

Authors:  Natalie Krahn; Jonathan T Fischer; Dieter Söll
Journal:  Front Microbiol       Date:  2020-10-21       Impact factor: 5.640

3.  Rational Design of Aptamer-Tagged tRNAs.

Authors:  Takahito Mukai
Journal:  Int J Mol Sci       Date:  2020-10-21       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.