Literature DB >> 24511637

Recoding the genetic code with selenocysteine.

Markus J Bröcker, Joanne M L Ho, George M Church, Dieter Söll, Patrick O'Donoghue.   

Abstract

Selenocysteine (Sec) is naturally incorporated into proteins by recoding the stop codon UGA. Sec is not hardwired to UGA, as the Sec insertion machinery was found to be able to site-specifically incorporate Sec directed by 58 of the 64 codons. For 15 sense codons, complete conversion of the codon meaning from canonical amino acid (AA) to Sec was observed along with a tenfold increase in selenoprotein yield compared to Sec insertion at the three stop codons. This high-fidelity sense-codon recoding mechanism was demonstrated for Escherichia coli formate dehydrogenase and recombinant human thioredoxin reductase and confirmed by independent biochemical and biophysical methods. Although Sec insertion at UGA is known to compete against protein termination, it is surprising that the Sec machinery has the ability to outcompete abundant aminoacyl-tRNAs in decoding sense codons. The findings have implications for the process of translation and the information storage capacity of the biological cell.

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Year:  2014        PMID: 24511637      PMCID: PMC4004526          DOI: 10.1002/anie.201308584

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  29 in total

1.  A dynamic competition between release factor 2 and the tRNA(Sec) decoding UGA at the recoding site of Escherichia coli formate dehydrogenase H.

Authors:  J B Mansell; D Guévremont; E S Poole; W P Tate
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

2.  Escherichia coli formate-hydrogen lyase. Purification and properties of the selenium-dependent formate dehydrogenase component.

Authors:  M J Axley; D A Grahame; T C Stadtman
Journal:  J Biol Chem       Date:  1990-10-25       Impact factor: 5.157

3.  Structural basis for mRNA recognition by elongation factor SelB.

Authors:  Satoko Yoshizawa; Linda Rasubala; Toyoyuki Ose; Daisuke Kohda; Dominique Fourmy; Katsumi Maenaka
Journal:  Nat Struct Mol Biol       Date:  2005-01-23       Impact factor: 15.369

4.  Selective charging of tRNA isoacceptors induced by amino-acid starvation.

Authors:  Kimberly A Dittmar; Michael A Sørensen; Johan Elf; Måns Ehrenberg; Tao Pan
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

Review 5.  Natural expansion of the genetic code.

Authors:  Alexandre Ambrogelly; Sotiria Palioura; Dieter Söll
Journal:  Nat Chem Biol       Date:  2007-01       Impact factor: 15.040

6.  Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster.

Authors:  J C Boyington; V N Gladyshev; S V Khangulov; T C Stadtman; P D Sun
Journal:  Science       Date:  1997-02-28       Impact factor: 47.728

Review 7.  The hydrogenases and formate dehydrogenases of Escherichia coli.

Authors:  G Sawers
Journal:  Antonie Van Leeuwenhoek       Date:  1994       Impact factor: 2.271

8.  Selenocysteine insertion or termination: factors affecting UGA codon fate and complementary anticodon:codon mutations.

Authors:  M J Berry; J W Harney; T Ohama; D L Hatfield
Journal:  Nucleic Acids Res       Date:  1994-09-11       Impact factor: 16.971

9.  Cotranslational insertion of selenocysteine into formate dehydrogenase from Escherichia coli directed by a UGA codon.

Authors:  F Zinoni; A Birkmann; W Leinfelder; A Böck
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

10.  Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

Authors:  H Dong; L Nilsson; C G Kurland
Journal:  J Mol Biol       Date:  1996-08-02       Impact factor: 5.469

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  28 in total

1.  Selenocysteine Insertion at a Predefined UAG Codon in a Release Factor 1 (RF1)-depleted Escherichia coli Host Strain Bypasses Species Barriers in Recombinant Selenoprotein Translation.

Authors:  Qing Cheng; Elias S J Arnér
Journal:  J Biol Chem       Date:  2017-02-13       Impact factor: 5.157

2.  Translation system engineering in Escherichia coli enhances non-canonical amino acid incorporation into proteins.

Authors:  Rui Gan; Jessica G Perez; Erik D Carlson; Ioanna Ntai; Farren J Isaacs; Neil L Kelleher; Michael C Jewett
Journal:  Biotechnol Bioeng       Date:  2017-02-02       Impact factor: 4.530

3.  Reducing the genetic code induces massive rearrangement of the proteome.

Authors:  Patrick O'Donoghue; Laure Prat; Martin Kucklick; Johannes G Schäfer; Katharina Riedel; Jesse Rinehart; Dieter Söll; Ilka U Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

4.  Selenoprotein T is a novel OST subunit that regulates UPR signaling and hormone secretion.

Authors:  Abdallah Hamieh; Dorthe Cartier; Houssni Abid; André Calas; Carole Burel; Christine Bucharles; Cedric Jehan; Luca Grumolato; Marc Landry; Patrice Lerouge; Youssef Anouar; Isabelle Lihrmann
Journal:  EMBO Rep       Date:  2017-09-19       Impact factor: 8.807

5.  Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs.

Authors:  Xian Fu; Ana Crnković; Anastasia Sevostyanova; Dieter Söll
Journal:  FEBS Lett       Date:  2018-10-24       Impact factor: 4.124

6.  Polyspecific pyrrolysyl-tRNA synthetases from directed evolution.

Authors:  Li-Tao Guo; Yane-Shih Wang; Akiyoshi Nakamura; Daniel Eiler; Jennifer M Kavran; Margaret Wong; Laura L Kiessling; Thomas A Steitz; Patrick O'Donoghue; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-10       Impact factor: 11.205

7.  Site-Specific Incorporation of Selenocysteine Using an Expanded Genetic Code and Palladium-Mediated Chemical Deprotection.

Authors:  Jun Liu; Feng Zheng; Rujin Cheng; Shanshan Li; Sharon Rozovsky; Qian Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2018-07-09       Impact factor: 15.419

Review 8.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

9.  [Facile Recoding of Selenocysteine in Nature].

Authors:  Takahito Mukai; Markus Englert; H James Tripp; Corwin Miller; Natalia N Ivanova; Edward M Rubin; Nikos C Kyrpides; Dieter Söll
Journal:  Angew Chem Weinheim Bergstr Ger       Date:  2016-03-15

10.  Facile Recoding of Selenocysteine in Nature.

Authors:  Takahito Mukai; Markus Englert; H James Tripp; Corwin Miller; Natalia N Ivanova; Edward M Rubin; Nikos C Kyrpides; Dieter Söll
Journal:  Angew Chem Int Ed Engl       Date:  2016-03-16       Impact factor: 15.336

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