Literature DB >> 26130807

Delicate conformational balance of the redox enzyme cytochrome P450cam.

Simon P Skinner1, Wei-Min Liu1, Yoshitaka Hiruma1, Monika Timmer1, Anneloes Blok1, Mathias A S Hass1, Marcellus Ubbink2.   

Abstract

The energy landscapes of proteins are highly complex and can be influenced by changes in physical and chemical conditions under which the protein is studied. The redox enzyme cytochrome P450cam undergoes a multistep catalytic cycle wherein two electrons are transferred to the heme group and the enzyme visits several conformational states. Using paramagnetic NMR spectroscopy with a lanthanoid tag, we show that the enzyme bound to its redox partner, putidaredoxin, is in a closed state at ambient temperature in solution. This result contrasts with recent crystal structures of the complex, which suggest that the enzyme opens up when bound to its partner. The closed state supports a model of catalysis in which the substrate is locked in the active site pocket and the enzyme acts as an insulator for the reactive intermediates of the reaction.

Entities:  

Keywords:  crystallography; cytochrome; dynamics; enzyme; paramagnetic NMR

Mesh:

Substances:

Year:  2015        PMID: 26130807      PMCID: PMC4517283          DOI: 10.1073/pnas.1502351112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Structural basis for effector control and redox partner recognition in cytochrome P450.

Authors:  Sarvind Tripathi; Huiying Li; Thomas L Poulos
Journal:  Science       Date:  2013-06-07       Impact factor: 47.728

2.  The structure of the cytochrome p450cam-putidaredoxin complex determined by paramagnetic NMR spectroscopy and crystallography.

Authors:  Yoshitaka Hiruma; Mathias A S Hass; Yuki Kikui; Wei-Min Liu; Betül Ölmez; Simon P Skinner; Anneloes Blok; Alexander Kloosterman; Hiroyasu Koteishi; Frank Löhr; Harald Schwalbe; Masaki Nojiri; Marcellus Ubbink
Journal:  J Mol Biol       Date:  2013-07-13       Impact factor: 5.469

3.  PARAssign--paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts.

Authors:  Simon P Skinner; Mois Moshev; Mathias A S Hass; Peter H J Keizers; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2013-03-23       Impact factor: 2.835

Review 4.  Structure determination of protein-protein complexes with long-range anisotropic paramagnetic NMR restraints.

Authors:  Mathias A S Hass; Marcellus Ubbink
Journal:  Curr Opin Struct Biol       Date:  2013-12-21       Impact factor: 6.809

5.  The conformation of P450cam in complex with putidaredoxin is dependent on oxidation state.

Authors:  William K Myers; Young-Tae Lee; R David Britt; David B Goodin
Journal:  J Am Chem Soc       Date:  2013-08-05       Impact factor: 15.419

6.  A functional proline switch in cytochrome P450cam.

Authors:  Bo OuYang; Susan Sondej Pochapsky; Marina Dang; Thomas C Pochapsky
Journal:  Structure       Date:  2008-05-29       Impact factor: 5.006

7.  Protein structure determination with paramagnetic solid-state NMR spectroscopy.

Authors:  Ishita Sengupta; Philippe S Nadaud; Christopher P Jaroniec
Journal:  Acc Chem Res       Date:  2013-03-06       Impact factor: 22.384

8.  Three-dimensional protein fold determination from backbone amide pseudocontact shifts generated by lanthanide tags at multiple sites.

Authors:  Hiromasa Yagi; Kala Bharath Pilla; Ansis Maleckis; Bim Graham; Thomas Huber; Gottfried Otting
Journal:  Structure       Date:  2013-05-02       Impact factor: 5.006

9.  Hot-spot residues in the cytochrome P450cam-putidaredoxin binding interface.

Authors:  Yoshitaka Hiruma; Ankur Gupta; Alexander Kloosterman; Caroline Olijve; Betül Olmez; Mathias A S Hass; Marcellus Ubbink
Journal:  Chembiochem       Date:  2013-12-02       Impact factor: 3.164

Review 10.  Cytochrome P450 family 1 inhibitors and structure-activity relationships.

Authors:  Jiawang Liu; Jayalakshmi Sridhar; Maryam Foroozesh
Journal:  Molecules       Date:  2013-11-25       Impact factor: 4.411

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  18 in total

1.  Structure restraints from heteronuclear pseudocontact shifts generated by lanthanide tags at two different sites.

Authors:  Benjamin J G Pearce; Shereen Jabar; Choy-Theng Loh; Monika Szabo; Bim Graham; Gottfried Otting
Journal:  J Biomol NMR       Date:  2017-04-22       Impact factor: 2.835

2.  Identification of productive and futile encounters in an electron transfer protein complex.

Authors:  Witold Andrałojć; Yoshitaka Hiruma; Wei-Min Liu; Enrico Ravera; Masaki Nojiri; Giacomo Parigi; Claudio Luchinat; Marcellus Ubbink
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

3.  Conformational selectivity in cytochrome P450 redox partner interactions.

Authors:  Scott A Hollingsworth; Dipanwita Batabyal; Brian D Nguyen; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-20       Impact factor: 11.205

4.  An encodable lanthanide binding tag with reduced size and flexibility for measuring residual dipolar couplings and pseudocontact shifts in large proteins.

Authors:  Adam W Barb; Ganesh P Subedi
Journal:  J Biomol NMR       Date:  2016-01-04       Impact factor: 2.835

5.  Structure of cytochrome P450 2B4 with an acetate ligand and an active site hydrogen bond network similar to oxyferrous P450cam.

Authors:  Yuting Yang; Weishu Bu; Sangchoul Im; Jennifer Meagher; Jeanne Stuckey; Lucy Waskell
Journal:  J Inorg Biochem       Date:  2018-04-30       Impact factor: 4.155

6.  An Intermediate Conformational State of Cytochrome P450cam-CN in Complex with Putidaredoxin.

Authors:  Shih-Wei Chuo; Lee-Ping Wang; R David Britt; David B Goodin
Journal:  Biochemistry       Date:  2019-04-26       Impact factor: 3.162

7.  Pulse EPR-enabled interpretation of scarce pseudocontact shifts induced by lanthanide binding tags.

Authors:  Elwy H Abdelkader; Xuejun Yao; Akiva Feintuch; Luke A Adams; Luigi Aurelio; Bim Graham; Daniella Goldfarb; Gottfried Otting
Journal:  J Biomol NMR       Date:  2015-11-23       Impact factor: 2.835

8.  Structural Study of a Flexible Active Site Loop in Human Indoleamine 2,3-Dioxygenase and Its Functional Implications.

Authors:  Lucía Álvarez; Ariel Lewis-Ballester; Adrián Roitberg; Darío A Estrin; Syun-Ru Yeh; Marcelo A Marti; Luciana Capece
Journal:  Biochemistry       Date:  2016-05-06       Impact factor: 3.162

9.  Kinetic Evidence for an Induced Fit Mechanism in the Binding of the Substrate Camphor by Cytochrome P450cam.

Authors:  F Peter Guengerich; Stella A Child; Ian R Barckhausen; Margo H Goldfarb
Journal:  ACS Catal       Date:  2020-12-29       Impact factor: 13.084

10.  Reconciling conformational heterogeneity and substrate recognition in cytochrome P450.

Authors:  Bhupendra R Dandekar; Navjeet Ahalawat; Jagannath Mondal
Journal:  Biophys J       Date:  2021-03-04       Impact factor: 4.033

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