Literature DB >> 27439869

Conformational selectivity in cytochrome P450 redox partner interactions.

Scott A Hollingsworth1, Dipanwita Batabyal1, Brian D Nguyen1, Thomas L Poulos2.   

Abstract

The heme iron of cytochromes P450 must be reduced to bind and activate molecular oxygen for substrate oxidation. Reducing equivalents are derived from a redox partner, which requires the formation of a protein-protein complex. A subject of increasing discussion is the role that redox partner binding plays, if any, in favoring significant structural changes in the P450s that are required for activity. Many P450s now have been shown to experience large open and closed motions. Several structural and spectral studies indicate that the well-studied P450cam adopts the open conformation when its redox partner, putidaredoxin (Pdx), binds, whereas recent NMR studies indicate that this view is incorrect. Given the relevance of this discrepancy to P450 chemistry, it is important to determine whether Pdx favors the open or closed form of P450cam. Here, we have used both computational and experimental isothermal titration calorimetry studies that unequivocally show Pdx favors binding to the open form of P450cam. Analyses of molecular-dynamic trajectories also provide insights into intermediate conformational states that could be relevant to catalysis.

Entities:  

Keywords:  P450; conformation; redox partner

Mesh:

Substances:

Year:  2016        PMID: 27439869      PMCID: PMC4978276          DOI: 10.1073/pnas.1606474113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Journal:  J Comput Chem       Date:  2004-01-30       Impact factor: 3.376

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Authors:  Araz Jakalian; David B Jack; Christopher I Bayly
Journal:  J Comput Chem       Date:  2002-12       Impact factor: 3.376

3.  Development and testing of a general amber force field.

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Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

4.  Direct observation of a novel perturbed oxyferrous catalytic intermediate during reduced putidaredoxin-initiated turnover of cytochrome P-450-CAM: probing the effector role of putidaredoxin in catalysis.

Authors:  Mary C Glascock; David P Ballou; John H Dawson
Journal:  J Biol Chem       Date:  2005-08-22       Impact factor: 5.157

Review 5.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

6.  Theoretical study of the product specificity in the hydroxylation of camphor, norcamphor, 5,5-difluorocamphor, and pericyclocamphanone by cytochrome P-450cam.

Authors:  J R Collins; G H Loew
Journal:  J Biol Chem       Date:  1988-03-05       Impact factor: 5.157

7.  Density Functional Theory Calculation of Bonding and Charge Parameters for Molecular Dynamics Studies on [FeFe] Hydrogenases.

Authors:  Christopher H Chang; Kwiseon Kim
Journal:  J Chem Theory Comput       Date:  2009-04-14       Impact factor: 6.006

8.  Molecular dynamics of the P450cam-Pdx complex reveals complex stability and novel interface contacts.

Authors:  Scott A Hollingsworth; Thomas L Poulos
Journal:  Protein Sci       Date:  2014-11-13       Impact factor: 6.725

9.  Crystal structure of putidaredoxin, the [2Fe-2S] component of the P450cam monooxygenase system from Pseudomonas putida.

Authors:  Irina F Sevrioukova; Carlos Garcia; Huiying Li; B Bhaskar; Thomas L Poulos
Journal:  J Mol Biol       Date:  2003-10-17       Impact factor: 5.469

10.  Integrating protein structural dynamics and evolutionary analysis with Bio3D.

Authors:  Lars Skjærven; Xin-Qiu Yao; Guido Scarabelli; Barry J Grant
Journal:  BMC Bioinformatics       Date:  2014-12-10       Impact factor: 3.169

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  21 in total

1.  Unexpected Differences between Two Closely Related Bacterial P450 Camphor Monooxygenases.

Authors:  Vidhi C Murarka; Dipanwita Batabyal; Jose A Amaya; Irina F Sevrioukova; Thomas L Poulos
Journal:  Biochemistry       Date:  2020-07-15       Impact factor: 3.162

2.  Structural insights into the mechanism of the drastic changes in enzymatic activity of the cytochrome P450 vitamin D3 hydroxylase (CYP107BR1) caused by a mutation distant from the active site.

Authors:  Yoshiaki Yasutake; Tomoshi Kameda; Tomohiro Tamura
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-04-26       Impact factor: 1.056

3.  Identification of productive and futile encounters in an electron transfer protein complex.

Authors:  Witold Andrałojć; Yoshitaka Hiruma; Wei-Min Liu; Enrico Ravera; Masaki Nojiri; Giacomo Parigi; Claudio Luchinat; Marcellus Ubbink
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

Review 4.  Molecular Dynamics Simulation for All.

Authors:  Scott A Hollingsworth; Ron O Dror
Journal:  Neuron       Date:  2018-09-19       Impact factor: 17.173

5.  Effect of Redox Partner Binding on Cytochrome P450 Conformational Dynamics.

Authors:  Dipanwita Batabyal; Logan S Richards; Thomas L Poulos
Journal:  J Am Chem Soc       Date:  2017-09-07       Impact factor: 15.419

6.  Specificity of the Redox Complex between Cytochrome P450 24A1 and Adrenodoxin Relies on Carbon-25 Hydroxylation of Vitamin-D Substrate.

Authors:  Amit Kumar; D Fernando Estrada
Journal:  Drug Metab Dispos       Date:  2019-07-09       Impact factor: 3.922

7.  Use of Phenoxyaniline Analogues To Generate Biochemical Insights into the Interactio n of Polybrominated Diphenyl Ether with CYP2B Enzymes.

Authors:  Chao Chen; Jingbao Liu; James R Halpert; P Ross Wilderman
Journal:  Biochemistry       Date:  2017-12-19       Impact factor: 3.162

8.  Effect of redox partner binding on CYP101D1 conformational dynamics.

Authors:  Dipanwita Batabyal; Thomas L Poulos
Journal:  J Inorg Biochem       Date:  2018-03-01       Impact factor: 4.155

9.  The cytochrome P450 24A1 interaction with adrenodoxin relies on multiple recognition sites that vary among species.

Authors:  D Fernando Estrada
Journal:  J Biol Chem       Date:  2018-01-25       Impact factor: 5.157

10.  Cytochrome-P450-Induced Ordering of Microsomal Membranes Modulates Affinity for Drugs.

Authors:  Carlo Barnaba; Bikash Ranjan Sahoo; Thirupathi Ravula; Ilce G Medina-Meza; Sang-Choul Im; G M Anantharamaiah; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-22       Impact factor: 15.336

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