Literature DB >> 31267498

Plasmodium falciparum In Vitro Drug Resistance Selections and Gene Editing.

Caroline L Ng1, David A Fidock2,3.   

Abstract

Malaria continues to be a global health burden, threatening over 40% of the world's population. Drug resistance in Plasmodium falciparum, the etiological agent of the majority of human malaria cases, is compromising elimination efforts. New approaches to treating drug-resistant malaria benefit from defining resistance liabilities of known antimalarial agents and compounds in development and defining genetic changes that mediate loss of parasite susceptibility. Here, we present protocols for in vitro selection of drug-resistant parasites and for site-directed gene editing of candidate resistance mediators to test for causality.

Entities:  

Keywords:  CRISPR/Cas9; Drug resistance; Gene editing; Malaria; Plasmodium falciparum; Selections; ZFN

Year:  2019        PMID: 31267498      PMCID: PMC6756925          DOI: 10.1007/978-1-4939-9550-9_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  51 in total

1.  Negative selection of Plasmodium falciparum reveals targeted gene deletion by double crossover recombination.

Authors:  Manoj T Duraisingh; Tony Triglia; Alan F Cowman
Journal:  Int J Parasitol       Date:  2002-01       Impact factor: 3.981

2.  Yeast dihydroorotate dehydrogenase as a new selectable marker for Plasmodium falciparum transfection.

Authors:  Suresh M Ganesan; Joanne M Morrisey; Hangjun Ke; Heather J Painter; Kamal Laroiya; Margaret A Phillips; Pradipsinh K Rathod; Michael W Mather; Akhil B Vaidya
Journal:  Mol Biochem Parasitol       Date:  2011-01-18       Impact factor: 1.759

3.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

4.  Efficient editing of malaria parasite genome using the CRISPR/Cas9 system.

Authors:  Cui Zhang; Bo Xiao; Yuanyuan Jiang; Yihua Zhao; Zhenkui Li; Han Gao; Yuan Ling; Jun Wei; Shaoneng Li; Mingke Lu; Xin-Zhuan Su; Huiting Cui; Jing Yuan
Journal:  MBio       Date:  2014-07-01       Impact factor: 7.867

5.  In vivo genome editing using Staphylococcus aureus Cas9.

Authors:  F Ann Ran; Le Cong; Winston X Yan; David A Scott; Jonathan S Gootenberg; Andrea J Kriz; Bernd Zetsche; Ophir Shalem; Xuebing Wu; Kira S Makarova; Eugene V Koonin; Phillip A Sharp; Feng Zhang
Journal:  Nature       Date:  2015-04-01       Impact factor: 49.962

6.  Rapid Generation of Marker-Free P. falciparum Fluorescent Reporter Lines Using Modified CRISPR/Cas9 Constructs and Selection Protocol.

Authors:  Catherin Marin Mogollon; Fiona J A van Pul; Takashi Imai; Jai Ramesar; Séverine Chevalley-Maurel; Guido M de Roo; Sabrina A J Veld; Hans Kroeze; Blandine M D Franke-Fayard; Chris J Janse; Shahid M Khan
Journal:  PLoS One       Date:  2016-12-20       Impact factor: 3.240

7.  Systematic CRISPR-Cas9-Mediated Modifications of Plasmodium yoelii ApiAP2 Genes Reveal Functional Insights into Parasite Development.

Authors:  Cui Zhang; Zhenkui Li; Huiting Cui; Yuanyuan Jiang; Zhenke Yang; Xu Wang; Han Gao; Cong Liu; Shujia Zhang; Xin-Zhuan Su; Jing Yuan
Journal:  mBio       Date:  2017-12-12       Impact factor: 7.867

8.  CRISPR/Cas9 Genome Editing Reveals That the Intron Is Not Essential for var2csa Gene Activation or Silencing in Plasmodium falciparum.

Authors:  Jessica M Bryant; Clément Regnault; Christine Scheidig-Benatar; Sebastian Baumgarten; Julien Guizetti; Artur Scherf
Journal:  mBio       Date:  2017-07-11       Impact factor: 7.867

9.  Malaria parasites utilize both homologous recombination and alternative end joining pathways to maintain genome integrity.

Authors:  Laura A Kirkman; Elizabeth A Lawrence; Kirk W Deitsch
Journal:  Nucleic Acids Res       Date:  2013-10-01       Impact factor: 16.971

10.  Plasmepsins IX and X are essential and druggable mediators of malaria parasite egress and invasion.

Authors:  Armiyaw S Nasamu; Svetlana Glushakova; Ilaria Russo; Barbara Vaupel; Anna Oksman; Arthur S Kim; Daved H Fremont; Niraj Tolia; Josh R Beck; Marvin J Meyers; Jacquin C Niles; Joshua Zimmerberg; Daniel E Goldberg
Journal:  Science       Date:  2017-10-27       Impact factor: 47.728

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  8 in total

1.  Novel Antimalarial Tetrazoles and Amides Active against the Hemoglobin Degradation Pathway in Plasmodium falciparum.

Authors:  Aloysus Lawong; Suraksha Gahalawat; John Okombo; Josefine Striepen; Tomas Yeo; Sachel Mok; Ioanna Deni; Jessica L Bridgford; Hanspeter Niederstrasser; Anwu Zhou; Bruce Posner; Sergio Wittlin; Francisco Javier Gamo; Benigno Crespo; Alisje Churchyard; Jake Baum; Nimisha Mittal; Elizabeth Winzeler; Benoît Laleu; Michael J Palmer; Susan A Charman; David A Fidock; Joseph M Ready; Margaret A Phillips
Journal:  J Med Chem       Date:  2021-02-23       Impact factor: 7.446

2.  Potent Antimalarials with Development Potential Identified by Structure-Guided Computational Optimization of a Pyrrole-Based Dihydroorotate Dehydrogenase Inhibitor Series.

Authors:  Michael J Palmer; Xiaoyi Deng; Shawn Watts; Goran Krilov; Aleksey Gerasyuto; Sreekanth Kokkonda; Farah El Mazouni; John White; Karen L White; Josefine Striepen; Jade Bath; Kyra A Schindler; Tomas Yeo; David M Shackleford; Sachel Mok; Ioanna Deni; Aloysus Lawong; Ann Huang; Gong Chen; Wen Wang; Jaya Jayaseelan; Kasiram Katneni; Rahul Patil; Jessica Saunders; Shatrughan P Shahi; Rajesh Chittimalla; Iñigo Angulo-Barturen; María Belén Jiménez-Díaz; Sergio Wittlin; Patrick K Tumwebaze; Philip J Rosenthal; Roland A Cooper; Anna Caroline Campos Aguiar; Rafael V C Guido; Dhelio B Pereira; Nimisha Mittal; Elizabeth A Winzeler; Diana R Tomchick; Benoît Laleu; Jeremy N Burrows; Pradipsinh K Rathod; David A Fidock; Susan A Charman; Margaret A Phillips
Journal:  J Med Chem       Date:  2021-04-20       Impact factor: 7.446

Review 3.  Assessing risks of Plasmodium falciparum resistance to select next-generation antimalarials.

Authors:  Maëlle Duffey; Benjamin Blasco; Jeremy N Burrows; Timothy N C Wells; David A Fidock; Didier Leroy
Journal:  Trends Parasitol       Date:  2021-05-14

4.  Characterization of Competitive Inhibitors of Plasmodium falciparum cGMP-Dependent Protein Kinase.

Authors:  Tyler Eck; Mariana Laureano de Souza; Melvin Delvillar; Kutub Ashraf; Rammohan R Yadav Bheemanaboina; Ramappa Chakrasali; Tamara Kreiss; John J Siekierka; David P Rotella; Purnima Bhanot; Nina M Goodey
Journal:  Chembiochem       Date:  2022-02-23       Impact factor: 3.461

Review 5.  Antimalarial Drug Resistance and Implications for the WHO Global Technical Strategy.

Authors:  Matthew M Ippolito; Kara A Moser; Jean-Bertin Bukasa Kabuya; Clark Cunningham; Jonathan J Juliano
Journal:  Curr Epidemiol Rep       Date:  2021-03-14

6.  Artemisinin resistance in the malaria parasite, Plasmodium falciparum, originates from its initial transcriptional response.

Authors:  Lei Zhu; Rob W van der Pluijm; Michal Kucharski; Sourav Nayak; Jaishree Tripathi; Nicholas J White; Nicholas P J Day; Abul Faiz; Aung Pyae Phyo; Chanaki Amaratunga; Dysoley Lek; Elizabeth A Ashley; François Nosten; Frank Smithuis; Hagai Ginsburg; Lorenz von Seidlein; Khin Lin; Mallika Imwong; Kesinee Chotivanich; Mayfong Mayxay; Mehul Dhorda; Hoang Chau Nguyen; Thuy Nhien Thanh Nguyen; Olivo Miotto; Paul N Newton; Podjanee Jittamala; Rupam Tripura; Sasithon Pukrittayakamee; Thomas J Peto; Tran Tinh Hien; Arjen M Dondorp; Zbynek Bozdech
Journal:  Commun Biol       Date:  2022-03-28

Review 7.  Plasmodium asexual growth and sexual development in the haematopoietic niche of the host.

Authors:  Kannan Venugopal; Franziska Hentzschel; Gediminas Valkiūnas; Matthias Marti
Journal:  Nat Rev Microbiol       Date:  2020-01-09       Impact factor: 78.297

8.  The Plasmodium falciparum ABC transporter ABCI3 confers parasite strain-dependent pleiotropic antimalarial drug resistance.

Authors:  James M Murithi; Ioanna Deni; Charisse Flerida A Pasaje; John Okombo; Jessica L Bridgford; Nina F Gnädig; Rachel L Edwards; Tomas Yeo; Sachel Mok; Anna Y Burkhard; Olivia Coburn-Flynn; Eva S Istvan; Tomoyo Sakata-Kato; Maria G Gomez-Lorenzo; Annie N Cowell; Kathryn J Wicht; Claire Le Manach; Gavreel F Kalantarov; Sumanta Dey; Maëlle Duffey; Benoît Laleu; Amanda K Lukens; Sabine Ottilie; Manu Vanaerschot; Ilya N Trakht; Francisco-Javier Gamo; Dyann F Wirth; Daniel E Goldberg; Audrey R Odom John; Kelly Chibale; Elizabeth A Winzeler; Jacquin C Niles; David A Fidock
Journal:  Cell Chem Biol       Date:  2021-07-06       Impact factor: 9.039

  8 in total

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