Literature DB >> 26098680

5-Formylcytosine can be a stable DNA modification in mammals.

Martin Bachman1, Santiago Uribe-Lewis2, Xiaoping Yang2, Heather E Burgess3, Mario Iurlaro3, Wolf Reik4, Adele Murrell2, Shankar Balasubramanian1.   

Abstract

5-Formylcytosine (5fC) is a rare base found in mammalian DNA and thought to be involved in active DNA demethylation. Here, we show that developmental dynamics of 5fC levels in mouse DNA differ from those of 5-hydroxymethylcytosine (5hmC), and using stable isotope labeling in vivo, we show that 5fC can be a stable DNA modification. These results suggest that 5fC has functional roles in DNA that go beyond being a demethylation intermediate.

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Year:  2015        PMID: 26098680      PMCID: PMC5486442          DOI: 10.1038/nchembio.1848

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  24 in total

1.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Authors:  Daniel Cortázar; Christophe Kunz; Jim Selfridge; Teresa Lettieri; Yusuke Saito; Eilidh MacDougall; Annika Wirz; David Schuermann; Angelika L Jacobs; Fredy Siegrist; Roland Steinacher; Josef Jiricny; Adrian Bird; Primo Schär
Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

2.  Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

Authors:  Miao Yu; Gary C Hon; Keith E Szulwach; Chun-Xiao Song; Liang Zhang; Audrey Kim; Xuekun Li; Qing Dai; Yin Shen; Beomseok Park; Jung-Hyun Min; Peng Jin; Bing Ren; Chuan He
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

3.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

Review 4.  Mammalian cytosine methylation at a glance.

Authors:  Steen K T Ooi; Anne H O'Donnell; Timothy H Bestor
Journal:  J Cell Sci       Date:  2009-08-15       Impact factor: 5.285

5.  Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics.

Authors:  Xingyu Lu; Dali Han; Boxuan Simen Zhao; Chun-Xiao Song; Li-Sheng Zhang; Louis C Doré; Chuan He
Journal:  Cell Res       Date:  2015-01-16       Impact factor: 25.617

6.  Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming.

Authors:  Xiao Hu; Lei Zhang; Shi-Qing Mao; Zheng Li; Jiekai Chen; Run-Rui Zhang; Hai-Ping Wu; Juan Gao; Fan Guo; Wei Liu; Gui-Fang Xu; Hai-Qiang Dai; Yujiang Geno Shi; Xianlong Li; Boqiang Hu; Fuchou Tang; Duanqing Pei; Guo-Liang Xu
Journal:  Cell Stem Cell       Date:  2014-02-13       Impact factor: 24.633

Review 7.  Eukaryotic cytosine methyltransferases.

Authors:  Mary Grace Goll; Timothy H Bestor
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

8.  Potential functional roles of DNA demethylation intermediates.

Authors:  Chun-Xiao Song; Chuan He
Journal:  Trends Biochem Sci       Date:  2013-08-08       Impact factor: 13.807

9.  Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates.

Authors:  Daniel Globisch; Martin Münzel; Markus Müller; Stylianos Michalakis; Mirko Wagner; Susanne Koch; Tobias Brückl; Martin Biel; Thomas Carell
Journal:  PLoS One       Date:  2010-12-23       Impact factor: 3.240

10.  5-Formylcytosine alters the structure of the DNA double helix.

Authors:  Eun-Ang Raiber; Pierre Murat; Dimitri Y Chirgadze; Dario Beraldi; Ben F Luisi; Shankar Balasubramanian
Journal:  Nat Struct Mol Biol       Date:  2014-12-15       Impact factor: 15.369

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  97 in total

1.  Error-prone replication of a 5-formylcytosine-mediated DNA-peptide cross-link in human cells.

Authors:  Spandana Naldiga; Shaofei Ji; Jenna Thomforde; Claudia M Nicolae; Marietta Lee; Zhongtao Zhang; George-Lucian Moldovan; Natalia Y Tretyakova; Ashis K Basu
Journal:  J Biol Chem       Date:  2019-05-28       Impact factor: 5.157

Review 2.  High-throughput sequencing offers new insights into 5-hydroxymethylcytosine.

Authors:  Alina P S Pang; Christopher Sugai; Alika K Maunakea
Journal:  Biomol Concepts       Date:  2016-06-01

3.  Oxidized Derivatives of 5-Methylcytosine Alter the Stability and Dehybridization Dynamics of Duplex DNA.

Authors:  Paul J Sanstead; Brennan Ashwood; Qing Dai; Chuan He; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2020-02-05       Impact factor: 2.991

Review 4.  Protein Interactions at Oxidized 5-Methylcytosine Bases.

Authors:  Gerd P Pfeifer; Piroska E Szabó; Jikui Song
Journal:  J Mol Biol       Date:  2019-08-08       Impact factor: 5.469

Review 5.  Novel genetic and epigenetic factors of importance for inter-individual differences in drug disposition, response and toxicity.

Authors:  Volker M Lauschke; Yitian Zhou; Magnus Ingelman-Sundberg
Journal:  Pharmacol Ther       Date:  2019-01-22       Impact factor: 12.310

6.  5-Formylcytosine does not change the global structure of DNA.

Authors:  Jack S Hardwick; Denis Ptchelkine; Afaf H El-Sagheer; Ian Tear; Daniel Singleton; Simon E V Phillips; Andrew N Lane; Tom Brown
Journal:  Nat Struct Mol Biol       Date:  2017-05-15       Impact factor: 15.369

7.  RNA polymerase II acts as a selective sensor for DNA lesions and endogenous DNA modifications.

Authors:  Ji Hyun Shin; Liang Xu; Dong Wang
Journal:  Transcription       Date:  2016-04-22

Review 8.  Are there specific readers of oxidized 5-methylcytosine bases?

Authors:  Jikui Song; Gerd P Pfeifer
Journal:  Bioessays       Date:  2016-08-02       Impact factor: 4.345

9.  The Nonbulky DNA Lesions Spiroiminodihydantoin and 5-Guanidinohydantoin Significantly Block Human RNA Polymerase II Elongation in Vitro.

Authors:  Marina Kolbanovskiy; Moinuddin A Chowdhury; Aditi Nadkarni; Suse Broyde; Nicholas E Geacintov; David A Scicchitano; Vladimir Shafirovich
Journal:  Biochemistry       Date:  2017-06-07       Impact factor: 3.162

Review 10.  DNA methylation and hydroxymethylation in hematologic differentiation and transformation.

Authors:  Myunggon Ko; Jungeun An; Anjana Rao
Journal:  Curr Opin Cell Biol       Date:  2015-11-18       Impact factor: 8.382

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