Literature DB >> 26085824

Engineering and Biology: Counsel for a Continued Relationship.

Brett Calcott1, Arnon Levy2, Mark L Siegal3, Orkun S Soyer4, Andreas Wagner5.   

Abstract

Biologists frequently draw on ideas and terminology from engineering. Evolutionary systems biology-with its circuits, switches, and signal processing-is no exception. In parallel with the frequent links drawn between biology and engineering, there is ongoing criticism against this cross-fertilization, using the argument that over-simplistic metaphors from engineering are likely to mislead us as engineering is fundamentally different from biology. In this article, we clarify and reconfigure the link between biology and engineering, presenting it in a more favorable light. We do so by, first, arguing that critics operate with a narrow and incorrect notion of how engineering actually works, and of what the reliance on ideas from engineering entails. Second, we diagnose and diffuse one significant source of concern about appeals to engineering, namely that they are inherently and problematically metaphorical. We suggest that there is plenty of fertile ground left for a continued, healthy relationship between engineering and biology.

Entities:  

Keywords:  Adaptationism; Design; Engineering; Evolutionary systems biology; Evolvability; Gene regulation; Metaphor

Year:  2015        PMID: 26085824      PMCID: PMC4465806          DOI: 10.1007/s13752-014-0198-3

Source DB:  PubMed          Journal:  Biol Theory        ISSN: 1555-5542


  21 in total

1.  The modularity of biological regulatory networks.

Authors:  D Thieffry; D Romero
Journal:  Biosystems       Date:  1999-04       Impact factor: 1.973

Review 2.  Reverse engineering of biological complexity.

Authors:  Marie E Csete; John C Doyle
Journal:  Science       Date:  2002-03-01       Impact factor: 47.728

3.  Biological networks: the tinkerer as an engineer.

Authors:  U Alon
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

4.  The roles of integration in molecular systems biology.

Authors:  Maureen A O'Malley; Orkun S Soyer
Journal:  Stud Hist Philos Biol Biomed Sci       Date:  2011-11-01

5.  Feed-forward loop circuits as a side effect of genome evolution.

Authors:  Otto X Cordero; Paulien Hogeweg
Journal:  Mol Biol Evol       Date:  2006-07-12       Impact factor: 16.240

Review 6.  The evolution of genetic networks by non-adaptive processes.

Authors:  Michael Lynch
Journal:  Nat Rev Genet       Date:  2007-10       Impact factor: 53.242

7.  The mismeasure of machine: Synthetic biology and the trouble with engineering metaphors.

Authors:  Maarten Boudry; Massimo Pigliucci
Journal:  Stud Hist Philos Biol Biomed Sci       Date:  2013-06-18

Review 8.  Evolutionary principles underlying structure and response dynamics of cellular networks.

Authors:  Arno Steinacher; Orkun S Soyer
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 9.  Protein molecules as computational elements in living cells.

Authors:  D Bray
Journal:  Nature       Date:  1995-07-27       Impact factor: 49.962

Review 10.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

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  2 in total

1.  A Philosophical Perspective on Evolutionary Systems Biology.

Authors:  Maureen A O'Malley; Orkun S Soyer; Mark L Siegal
Journal:  Biol Theory       Date:  2015-03-01

Review 2.  Immunology Meets Bioengineering: Improving the Effectiveness of Glioblastoma Immunotherapy.

Authors:  Zahra Fekrirad; Amir Barzegar Behrooz; Shokoofeh Ghaemi; Arezou Khosrojerdi; Atefeh Zarepour; Ali Zarrabi; Ehsan Arefian; Saeid Ghavami
Journal:  Cancers (Basel)       Date:  2022-07-29       Impact factor: 6.575

  2 in total

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