Literature DB >> 11872830

Reverse engineering of biological complexity.

Marie E Csete1, John C Doyle.   

Abstract

Advanced technologies and biology have extremely different physical implementations, but they are far more alike in systems-level organization than is widely appreciated. Convergent evolution in both domains produces modular architectures that are composed of elaborate hierarchies of protocols and layers of feedback regulation, are driven by demand for robustness to uncertain environments, and use often imprecise components. This complexity may be largely hidden in idealized laboratory settings and in normal operation, becoming conspicuous only when contributing to rare cascading failures. These puzzling and paradoxical features are neither accidental nor artificial, but derive from a deep and necessary interplay between complexity and robustness, modularity, feedback, and fragility. This review describes insights from engineering theory and practice that can shed some light on biological complexity.

Mesh:

Year:  2002        PMID: 11872830     DOI: 10.1126/science.1069981

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  247 in total

1.  Frequency domain analysis of noise in autoregulated gene circuits.

Authors:  Michael L Simpson; Chris D Cox; Gary S Sayler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-01       Impact factor: 11.205

2.  Design then mutate.

Authors:  Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

Review 3.  Aspects of plant intelligence.

Authors:  Anthony Trewavas
Journal:  Ann Bot       Date:  2003-05-09       Impact factor: 4.357

4.  Complex metabolic oscillations in plants forced by harmonic irradiance.

Authors:  Ladislav Nedbal; Vítezslav Brezina
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

Review 5.  The computational integrated myocyte: a view into the virtual heart.

Authors:  James B Bassingthwaighte; Kalyan C Vinnakota
Journal:  Ann N Y Acad Sci       Date:  2004-05       Impact factor: 5.691

6.  Mathematical modeling reveals threshold mechanism in CD95-induced apoptosis.

Authors:  M Bentele; I Lavrik; M Ulrich; S Stösser; D W Heermann; H Kalthoff; P H Krammer; R Eils
Journal:  J Cell Biol       Date:  2004-09-13       Impact factor: 10.539

7.  Robustness properties of circadian clock architectures.

Authors:  Jörg Stelling; Ernst Dieter Gilles; Francis J Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-30       Impact factor: 11.205

8.  Optimal identification of biochemical reaction networks.

Authors:  Xiao-jiang Feng; Herschel Rabitz
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

9.  Systematic and systemic immunology: on the future of research and its applications.

Authors:  Philippe Kourilsky
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

10.  Can a Link Be Found Between Physical Resilience and Frailty in Older Adults by Studying Dynamical Systems?

Authors:  Ravi Varadhan; Jeremy D Walston; Karen Bandeen-Roche
Journal:  J Am Geriatr Soc       Date:  2018-05-04       Impact factor: 5.562

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