Literature DB >> 26083961

Unusual Peroxide-Dependent, Heme-Transforming Reaction Catalyzed by HemQ.

Arianna I Celis1, Bennett R Streit1, Garrett C Moraski1, Ravi Kant1, Timothy D Lash2, Gudrun S Lukat-Rodgers3, Kenton R Rodgers3, Jennifer L DuBois1.   

Abstract

A recently proposed pathway for heme b biosynthesis, common to diverse bacteria, has the conversion of two of the four propionates on coproheme III to vinyl groups as its final step. This reaction is catalyzed in a cofactor-independent, H2O2-dependent manner by the enzyme HemQ. Using the HemQ from Staphylococcus aureus (SaHemQ), the initial decarboxylation step was observed to rapidly and obligately yield the three-propionate harderoheme isomer III as the intermediate, while the slower second decarboxylation appeared to control the overall rate. Both synthetic harderoheme isomers III and IV reacted when bound to HemQ, the former more slowly than the latter. While H2O2 is the assumed biological oxidant, either H2O2 or peracetic acid yielded the same intermediates and products, though amounts significantly greater than the expected 2 equiv were required in both cases and peracetic acid reacted faster. The ability of peracetic acid to substitute for H2O2 suggests that, despite the lack of catalytic residues conventionally present in heme peroxidase active sites, reaction pathways involving high-valent iron intermediates cannot be ruled out.

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Year:  2015        PMID: 26083961      PMCID: PMC4950513          DOI: 10.1021/acs.biochem.5b00492

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

Review 1.  Structure and function of enzymes in heme biosynthesis.

Authors:  Gunhild Layer; Joachim Reichelt; Dieter Jahn; Dirk W Heinz
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

2.  The enigma of coproporphyrinogen oxidase: how does this unusual enzyme carry out oxidative decarboxylations to afford vinyl groups?

Authors:  Timothy D Lash
Journal:  Bioorg Med Chem Lett       Date:  2005-10-15       Impact factor: 2.823

Review 3.  Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase.

Authors:  Toshitaka Matsui; Mari Iwasaki; Ryota Sugiyama; Masaki Unno; Masao Ikeda-Saito
Journal:  Inorg Chem       Date:  2010-04-19       Impact factor: 5.165

4.  Normal and abnormal heme biosynthesis. 6. Synthesis and metabolism of a series of monovinylporphyrinogens related to harderoporphyrinogen. Further insights into the oxidative decarboxylation of porphyrinogen substrates by coproporphyrinogen oxidase.

Authors:  Timothy D Lash; Ukti N Mani; Anna-Sigrid I M Keck; Marjorie A Jones
Journal:  J Org Chem       Date:  2010-05-21       Impact factor: 4.354

5.  Discovery and Characterization of HemQ: an essential heme biosynthetic pathway component.

Authors:  Tamara A Dailey; Tye O Boynton; Angela-Nadia Albetel; Svetlana Gerdes; Michael K Johnson; Harry A Dailey
Journal:  J Biol Chem       Date:  2010-06-11       Impact factor: 5.157

6.  4-vinyl and 2,4-divinyl deuteration effects on the low frequency resonance Raman bands of myoglobin: correlation with the structure of vinyl group.

Authors:  K Uchida; Y Susai; E Hirotani; T Kimura; T Yoneya; H Takeuchi; I Harada
Journal:  J Biochem       Date:  1988-06       Impact factor: 3.387

7.  Role of the proximal ligand in peroxidase catalysis. Crystallographic, kinetic, and spectral studies of cytochrome c peroxidase proximal ligand mutants.

Authors:  K Choudhury; M Sundaramoorthy; A Hickman; T Yonetani; E Woehl; M F Dunn; T L Poulos
Journal:  J Biol Chem       Date:  1994-08-12       Impact factor: 5.157

8.  Effects of systematic peripheral group deuteration on the low-frequency resonance Raman spectra of myoglobin derivatives.

Authors:  Piotr J Mak; Edyta Podstawka; James R Kincaid; Leonard M Proniewicz
Journal:  Biopolymers       Date:  2004-10-15       Impact factor: 2.505

9.  The oxygen-independent coproporphyrinogen III oxidase HemN utilizes harderoporphyrinogen as a reaction intermediate during conversion of coproporphyrinogen III to protoporphyrinogen IX.

Authors:  Katrin Rand; Claudia Noll; Hans Martin Schiebel; Dorit Kemken; Thomas Dülcks; Markus Kalesse; Dirk W Heinz; Gunhild Layer
Journal:  Biol Chem       Date:  2010-01       Impact factor: 3.915

10.  The alternative route to heme in the methanogenic archaeon Methanosarcina barkeri.

Authors:  Melanie Kühner; Kristin Haufschildt; Alexander Neumann; Sonja Storbeck; Judith Streif; Gunhild Layer
Journal:  Archaea       Date:  2014-01-23       Impact factor: 3.273

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  27 in total

Review 1.  Making and breaking heme.

Authors:  Arianna I Celis; Jennifer L DuBois
Journal:  Curr Opin Struct Biol       Date:  2019-02-22       Impact factor: 6.809

2.  Distinguishing Active Site Characteristics of Chlorite Dismutases with Their Cyanide Complexes.

Authors:  Zachary Geeraerts; Arianna I Celis; Jeffery A Mayfield; Megan Lorenz; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2018-02-16       Impact factor: 3.162

Review 3.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

4.  Active Sites of O2-Evolving Chlorite Dismutases Probed by Halides and Hydroxides and New Iron-Ligand Vibrational Correlations.

Authors:  Zachary Geeraerts; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2017-08-17       Impact factor: 3.162

5.  Reactions of Ferrous Coproheme Decarboxylase (HemQ) with O2 and H2O2 Yield Ferric Heme b.

Authors:  Bennett R Streit; Arianna I Celis; Krista Shisler; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2016-12-16       Impact factor: 3.162

Review 6.  Heme Synthesis and Acquisition in Bacterial Pathogens.

Authors:  Jacob E Choby; Eric P Skaar
Journal:  J Mol Biol       Date:  2016-03-24       Impact factor: 5.469

7.  Structure-Based Mechanism for Oxidative Decarboxylation Reactions Mediated by Amino Acids and Heme Propionates in Coproheme Decarboxylase (HemQ).

Authors:  Arianna I Celis; George H Gauss; Bennett R Streit; Krista Shisler; Garrett C Moraski; Kenton R Rodgers; Gudrun S Lukat-Rodgers; John W Peters; Jennifer L DuBois
Journal:  J Am Chem Soc       Date:  2017-01-27       Impact factor: 15.419

Review 8.  Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.

Authors:  Harry A Dailey; Tamara A Dailey; Svetlana Gerdes; Dieter Jahn; Martina Jahn; Mark R O'Brian; Martin J Warren
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-25       Impact factor: 11.056

9.  Control of Metabolite Flux during the Final Steps of Heme b Biosynthesis in Gram-Positive Bacteria.

Authors:  Arianna I Celis; Jacob E Choby; James Kentro; Eric P Skaar; Jennifer L DuBois
Journal:  Biochemistry       Date:  2019-06-26       Impact factor: 3.162

10.  Decarboxylation involving a ferryl, propionate, and a tyrosyl group in a radical relay yields heme b.

Authors:  Bennett R Streit; Arianna I Celis; Garrett C Moraski; Krista A Shisler; Eric M Shepard; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2018-02-02       Impact factor: 5.157

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