Literature DB >> 28758386

Active Sites of O2-Evolving Chlorite Dismutases Probed by Halides and Hydroxides and New Iron-Ligand Vibrational Correlations.

Zachary Geeraerts1, Kenton R Rodgers1, Jennifer L DuBois2, Gudrun S Lukat-Rodgers1.   

Abstract

O2-evolving chlorite dismutases (Clds) fall into two subfamilies, which efficiently convert ClO2- to O2 and Cl-. The Cld from Dechloromonas aromatica (DaCld) represents the chlorite-decomposing homopentameric enzymes found in perchlorate- and chlorate-respiring bacteria. The Cld from the Gram-negative human pathogen Klebsiella pneumoniae (KpCld) is representative of the second subfamily, comprising homodimeric enzymes having truncated N-termini. Here steric and nonbonding properties of the DaCld and KpCld active sites have been probed via kinetic, thermodynamic, and spectroscopic behaviors of their fluorides, chlorides, and hydroxides. Cooperative binding of Cl- to KpCld drives formation of a hexacoordinate, high-spin aqua heme, whereas DaCld remains pentacoordinate and high-spin under analogous conditions. Fluoride coordinates to the heme iron in KpCld and DaCld, exhibiting ν(FeIII-F) bands at 385 and 390 cm-1, respectively. Correlation of these frequencies with their CT1 energies reveals strong H-bond donation to the F- ligand, indicating that atoms directly coordinated to heme iron are accessible to distal H-bond donation. New vibrational frequency correlations between either ν(FeIII-F) or ν(FeIII-OH) and ν(FeII-His) of Clds and other heme proteins are reported. These correlations orthogonalize proximal and distal effects on the bonding between iron and exogenous π-donor ligands. The axial Fe-X vibrations and the relationships between them illuminate both similarities and differences in the H-bonding and electrostatic properties of the distal and proximal heme environments in pentameric and dimeric Clds. Moreover, they provide general insight into the structural basis of reactivity toward substrates in heme-dependent enzymes and their mechanistic intermediates, especially those containing the ferryl moiety.

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Year:  2017        PMID: 28758386      PMCID: PMC5602553          DOI: 10.1021/acs.biochem.7b00572

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  69 in total

1.  The homopentameric chlorite dismutase from Magnetospirillum sp.

Authors:  Diana M Freire; Maria G Rivas; André M Dias; Ana T Lopes; Cristina Costa; Teresa Santos-Silva; Sabine Van Doorslaer; Pablo J González
Journal:  J Inorg Biochem       Date:  2015-07-15       Impact factor: 4.155

2.  Resonance Raman studies of hemoglobins reconstituted with mesoheme. Unperturbed iron-histidine stretching frequencies in a functionally altered hemoglobin.

Authors:  S Jeyarajah; J R Kincaid
Journal:  Biochemistry       Date:  1990-05-29       Impact factor: 3.162

3.  Discovery and Characterization of HemQ: an essential heme biosynthetic pathway component.

Authors:  Tamara A Dailey; Tye O Boynton; Angela-Nadia Albetel; Svetlana Gerdes; Michael K Johnson; Harry A Dailey
Journal:  J Biol Chem       Date:  2010-06-11       Impact factor: 5.157

4.  Assignment of the Fe-Nepsilon (His F8) stretching band in the resonance Raman spectra of deoxy myoglobin.

Authors:  T Kitagawa; K Nagai; M Tsubaki
Journal:  FEBS Lett       Date:  1979-08-15       Impact factor: 4.124

5.  Peroxidase-type reactions suggest a heterolytic/nucleophilic O-O joining mechanism in the heme-dependent chlorite dismutase.

Authors:  Jeffrey A Mayfield; Béatrice Blanc; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2013-09-23       Impact factor: 3.162

6.  Alternative spectrophotometric method for standardization of chlorite aqueous solutions.

Authors:  Marilia Philippi; Heldiane S dos Santos; Aline O Martins; Carla M N Azevedo; Marçal Pires
Journal:  Anal Chim Acta       Date:  2007-01-13       Impact factor: 6.558

7.  Fluoride as a probe for H-bonding interactions in the active site of heme proteins: the case of Thermobifida fusca hemoglobin.

Authors:  Francesco P Nicoletti; Enrica Droghetti; Leonardo Boechi; Alessandra Bonamore; Natascia Sciamanna; Darío A Estrin; Alessandro Feis; Alberto Boffi; Giulietta Smulevich
Journal:  J Am Chem Soc       Date:  2011-12-05       Impact factor: 15.419

8.  Ligand Binding to Chlorite Dismutase from Magnetospirillum sp.

Authors:  Amy De Schutter; Hugo D Correia; Diana M Freire; María G Rivas; Alberto Rizzi; Teresa Santos-Silva; Pablo J González; Sabine Van Doorslaer
Journal:  J Phys Chem B       Date:  2015-08-24       Impact factor: 2.991

9.  New insight into the peroxidase-hydroxamic acid interaction revealed by the combination of spectroscopic and crystallographic studies.

Authors:  Chiara Indiani; Elisa Santoni; Maurizio Becucci; Alberto Boffi; Keiichi Fukuyama; Giulietta Smulevich
Journal:  Biochemistry       Date:  2003-12-02       Impact factor: 3.162

10.  Cation transport in Escherichia coli. II. Intracellular chloride concentration.

Authors:  S G SCHULTZ; N L WILSON; W EPSTEIN
Journal:  J Gen Physiol       Date:  1962-09       Impact factor: 4.086

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  6 in total

1.  Distinguishing Active Site Characteristics of Chlorite Dismutases with Their Cyanide Complexes.

Authors:  Zachary Geeraerts; Arianna I Celis; Jeffery A Mayfield; Megan Lorenz; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2018-02-16       Impact factor: 3.162

2.  Roles of High-valent Hemes and pH Dependence in Halite Decomposition Catalyzed by Chlorite Dismutase from Dechloromonas aromatica.

Authors:  Zachary Geeraerts; Olivia R Stiller; Gudrun S Lukat-Rodgers; Kenton R Rodgers
Journal:  ACS Catal       Date:  2022-07-06       Impact factor: 13.700

3.  Molecular Mechanism of Enzymatic Chlorite Detoxification: Insights from Structural and Kinetic Studies.

Authors:  Irene Schaffner; Georg Mlynek; Nicola Flego; Dominic Pühringer; Julian Libiseller-Egger; Leighton Coates; Stefan Hofbauer; Marzia Bellei; Paul G Furtmüller; Gianantonio Battistuzzi; Giulietta Smulevich; Kristina Djinović-Carugo; Christian Obinger
Journal:  ACS Catal       Date:  2017-10-13       Impact factor: 13.084

4.  Insights into the Active Site of Coproheme Decarboxylase from Listeria monocytogenes.

Authors:  Lisa Milazzo; Stefan Hofbauer; Barry D Howes; Thomas Gabler; Paul G Furtmüller; Christian Obinger; Giulietta Smulevich
Journal:  Biochemistry       Date:  2018-03-22       Impact factor: 3.162

5.  Structure and reactivity of chlorite dismutase nitrosyls.

Authors:  Zachary Geeraerts; Alisa K Heskin; Jennifer DuBois; Kenton R Rodgers; Gudrun S Lukat-Rodgers
Journal:  J Inorg Biochem       Date:  2020-07-26       Impact factor: 4.155

6.  A traffic light enzyme: acetate binding reversibly switches chlorite dismutase from a red- to a green-colored heme protein.

Authors:  Durga Mahor; Julia Püschmann; Menno van den Haak; Pepijn J Kooij; David L J van den Ouden; Marc J F Strampraad; Batoul Srour; Peter-Leon Hagedoorn
Journal:  J Biol Inorg Chem       Date:  2020-04-03       Impact factor: 3.358

  6 in total

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