Literature DB >> 15378481

Effects of systematic peripheral group deuteration on the low-frequency resonance Raman spectra of myoglobin derivatives.

Piotr J Mak1, Edyta Podstawka, James R Kincaid, Leonard M Proniewicz.   

Abstract

Resonance Raman spectra are reported for a series of systematically deuterated analogues of myoglobin in its deoxy state as well as for its CO and O(2) adducts. Specifically, the myoglobin samples studied are those that have been reconstituted with deuterated protoheme analogues. These include the methine deuterated, protoheme-d4; analogue bearing C(2)H(3) groups at the 1, 3, 5, and 8 positions, protoheme-d12; the species bearing C(2)H(3) groups at the 1 and 3 positions only, 1,3-protoheme-d6; and the species bearing C(2)H(3) groups at the 5 and 8 positions only, 5,8-protoheme-d6. While the results are generally consistent with previously reported data for synthetic metalloporphyrin models and previous studies of labeled heme proteins, the high-quality low-frequency RR data reported here reveal several important aspects of these low-frequency modes. Of special interest is the fact that, using the two d6-protoheme analogues, it is shown that certain modes are apparently localized on particular pyrrole rings, while others are localized on different rings; i.e., several of these low-frequency modes are localized on one side of the heme.

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Year:  2004        PMID: 15378481     DOI: 10.1002/bip.20115

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  11 in total

1.  Kinetic and spectroscopic studies of hemin acquisition in the hemophore HasAp from Pseudomonas aeruginosa.

Authors:  Erik T Yukl; Grace Jepkorir; Aileen Y Alontaga; Lawrence Pautsch; Juan C Rodriguez; Mario Rivera; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

2.  Noncovalent interactions dominate dynamic heme distortion in cytochrome P450 4B1.

Authors:  Gareth K Jennings; Mei-Hui Hsu; Lisa S Shock; Eric F Johnson; John C Hackett
Journal:  J Biol Chem       Date:  2018-06-01       Impact factor: 5.157

Review 3.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

4.  Defining CYP3A4 structural responses to substrate binding. Raman spectroscopic studies of a nanodisc-incorporated mammalian cytochrome P450.

Authors:  Piotr J Mak; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2011-01-05       Impact factor: 15.419

5.  Biophysical characterization of Aptenodytes forsteri cytochrome P450 aromatase.

Authors:  Francisco Zarate-Perez; Jesús B Velázquez-Fernández; Gareth K Jennings; Lisa S Shock; Charles E Lyons; John C Hackett
Journal:  J Inorg Biochem       Date:  2018-04-07       Impact factor: 4.155

6.  Resonance Raman spectroscopy reveals that substrate structure selectively impacts the heme-bound diatomic ligands of CYP17.

Authors:  Piotr J Mak; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

7.  Spectral Characterization of a Novel NO Sensing Protein in Bacteria: NosP.

Authors:  Bezalel A Bacon; Yilin Liu; James R Kincaid; Elizabeth M Boon
Journal:  Biochemistry       Date:  2018-10-16       Impact factor: 3.162

8.  Resonance Raman interrogation of the consequences of heme rotational disorder in myoglobin and its ligated derivatives.

Authors:  Freeborn Rwere; Piotr J Mak; James R Kincaid
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

9.  N-Heterocyclic Carbene Capture by Cytochrome P450 3A4.

Authors:  Gareth K Jennings; Caroline M Ritchie; Lisa S Shock; Charles E Lyons; John C Hackett
Journal:  Mol Pharmacol       Date:  2016-04-28       Impact factor: 4.436

10.  Defining resonance Raman spectral responses to substrate binding by cytochrome P450 from Pseudomonas putida.

Authors:  Piotr J Mak; Daniel Kaluka; Munyaradzi Edith Manyumwa; Haiqing Zhang; Tianjing Deng; James R Kincaid
Journal:  Biopolymers       Date:  2008-11       Impact factor: 2.505

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