Literature DB >> 20506125

Structure and function of enzymes in heme biosynthesis.

Gunhild Layer1, Joachim Reichelt, Dieter Jahn, Dirk W Heinz.   

Abstract

Tetrapyrroles like hemes, chlorophylls, and cobalamin are complex macrocycles which play essential roles in almost all living organisms. Heme serves as prosthetic group of many proteins involved in fundamental biological processes like respiration, photosynthesis, and the metabolism and transport of oxygen. Further, enzymes such as catalases, peroxidases, or cytochromes P450 rely on heme as essential cofactors. Heme is synthesized in most organisms via a highly conserved biosynthetic route. In humans, defects in heme biosynthesis lead to severe metabolic disorders called porphyrias. The elucidation of the 3D structures for all heme biosynthetic enzymes over the last decade provided new insights into their function and elucidated the structural basis of many known diseases. In terms of structure and function several rather unique proteins were revealed such as the V-shaped glutamyl-tRNA reductase, the dipyrromethane cofactor containing porphobilinogen deaminase, or the "Radical SAM enzyme" coproporphyrinogen III dehydrogenase. This review summarizes the current understanding of the structure-function relationship for all heme biosynthetic enzymes and their potential interactions in the cell.

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Year:  2010        PMID: 20506125      PMCID: PMC2895239          DOI: 10.1002/pro.405

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  187 in total

1.  Measurement of ferrochelatase activity using a novel assay suggests that plastids are the major site of haem biosynthesis in both photosynthetic and non-photosynthetic cells of pea (Pisum sativum L.).

Authors:  Johanna E Cornah; Jennifer M Roper; Davinder Pal Singh; Alison G Smith
Journal:  Biochem J       Date:  2002-03-01       Impact factor: 3.857

2.  Evolutionary relationship between initial enzymes of tetrapyrrole biosynthesis.

Authors:  Jörg O Schulze; Wolf-Dieter Schubert; Jürgen Moser; Dieter Jahn; Dirk W Heinz
Journal:  J Mol Biol       Date:  2006-03-10       Impact factor: 5.469

3.  Aerobic and anaerobic coproporphyrinogenase activities in extracts from Saccharomyces cerevisiae.

Authors:  R Poulson; W J Polglase
Journal:  J Biol Chem       Date:  1974-10-25       Impact factor: 5.157

4.  Identification of [2Fe-2S] clusters in microbial ferrochelatases.

Authors:  Tamara A Dailey; Harry A Dailey
Journal:  J Bacteriol       Date:  2002-05       Impact factor: 3.490

5.  Transient-state kinetic analysis of Synechococcus glutamate 1-semialdehyde aminotransferase.

Authors:  M A Smith; P J King; B Grimm
Journal:  Biochemistry       Date:  1998-01-06       Impact factor: 3.162

6.  tRNA recognition by glutamyl-tRNA reductase.

Authors:  Lennart Randau; Stefan Schauer; Alexandre Ambrogelly; Juan Carlos Salazar; Jürgen Moser; Shun-ichi Sekine; Shigeyuki Yokoyama; Dieter Söll; Dieter Jahn
Journal:  J Biol Chem       Date:  2004-06-11       Impact factor: 5.157

7.  Cloning and characterization of the Escherichia coli hemN gene encoding the oxygen-independent coproporphyrinogen III oxidase.

Authors:  B Troup; C Hungerer; D Jahn
Journal:  J Bacteriol       Date:  1995-06       Impact factor: 3.490

8.  Mouse protoporphyrinogen oxidase. Kinetic parameters and demonstration of inhibition by bilirubin.

Authors:  G C Ferreira; H A Dailey
Journal:  Biochem J       Date:  1988-03-01       Impact factor: 3.857

9.  Purification and partial characterisation of barley glutamyl-tRNA(Glu) reductase, the enzyme that directs glutamate to chlorophyll biosynthesis.

Authors:  B Pontoppidan; C G Kannangara
Journal:  Eur J Biochem       Date:  1994-10-15

10.  Purification of bovine protoporphyrinogen oxidase: immunological cross-reactivity and structural relationship to ferrochelatase.

Authors:  L J Siepker; M Ford; R de Kock; S Kramer
Journal:  Biochim Biophys Acta       Date:  1987-07-07
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  83 in total

1.  Crystal structure of the heme d1 biosynthesis enzyme NirE in complex with its substrate reveals new insights into the catalytic mechanism of S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferases.

Authors:  Sonja Storbeck; Sayantan Saha; Joern Krausze; Björn U Klink; Dirk W Heinz; Gunhild Layer
Journal:  J Biol Chem       Date:  2011-05-31       Impact factor: 5.157

2.  Tetrapyrrole Metabolism in Arabidopsis thaliana.

Authors:  Ryouichi Tanaka; Koichi Kobayashi; Tatsuru Masuda
Journal:  Arabidopsis Book       Date:  2011-07-31

Review 3.  One ring to rule them all: trafficking of heme and heme synthesis intermediates in the metazoans.

Authors:  Iqbal Hamza; Harry A Dailey
Journal:  Biochim Biophys Acta       Date:  2012-05-08

4.  Illuminating the black box of B12 biosynthesis.

Authors:  Harry A Dailey
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-23       Impact factor: 11.205

5.  Functional asymmetry for the active sites of linked 5-aminolevulinate synthase and 8-amino-7-oxononanoate synthase.

Authors:  Tracy D Turbeville; Junshun Zhang; W Christopher Adams; Gregory A Hunter; Gloria C Ferreira
Journal:  Arch Biochem Biophys       Date:  2011-05-11       Impact factor: 4.013

6.  Inducing iron deficiency improves erythropoiesis and photosensitivity in congenital erythropoietic porphyria.

Authors:  Daniel N Egan; Zhantao Yang; John Phillips; Janis L Abkowitz
Journal:  Blood       Date:  2015-05-13       Impact factor: 22.113

Review 7.  Metallation and mismetallation of iron and manganese proteins in vitro and in vivo: the class I ribonucleotide reductases as a case study.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Metallomics       Date:  2012-09-18       Impact factor: 4.526

Review 8.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

9.  Effects of 5-Aminolevulinic Acid on Gene Expression, Immunity, and ATP Levels in Pacific White Shrimp, Litopenaeus vannamei.

Authors:  Ivane R Pedrosa-Gerasmio; Tohru Tanaka; Asuka Sumi; Hidehiro Kondo; Ikuo Hirono
Journal:  Mar Biotechnol (NY)       Date:  2018-08-25       Impact factor: 3.619

10.  Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin.

Authors:  Harry A Dailey; Svetlana Gerdes; Tamara A Dailey; Joseph S Burch; John D Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

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