Literature DB >> 26052005

Single-molecule insights into mRNA dynamics in neurons.

Adina R Buxbaum1, Young J Yoon2, Robert H Singer1, Hye Yoon Park3.   

Abstract

Targeting of mRNAs to neuronal dendrites and axons plays an integral role in intracellular signaling, development, and synaptic plasticity. Single-molecule imaging of mRNAs in neurons and brain tissue has led to enhanced understanding of mRNA dynamics. Here we discuss aspects of mRNA regulation as revealed by single-molecule detection, which has led to quantitative analyses of mRNA diversity, localization, transport, and translation. These exciting new discoveries propel our understanding of the life of an mRNA in a neuron and how its activity is regulated at the single-molecule level.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA localization; local translation; mRNA tracking; smFISH

Mesh:

Substances:

Year:  2015        PMID: 26052005      PMCID: PMC4515374          DOI: 10.1016/j.tcb.2015.05.005

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  98 in total

1.  Apolipoprotein E mRNA is transported to dendrites and may have a role in synaptic structural plasticity.

Authors:  Jun-Young Oh; Yeon-Ju Nam; Anna Jo; Hyo-Soon Cheon; Sang-Myung Rhee; Joong-Ki Park; Jin-A Lee; Hyong Kyu Kim
Journal:  J Neurochem       Date:  2010-04-28       Impact factor: 5.372

Review 2.  To localize or not to localize: mRNA fate is in 3'UTR ends.

Authors:  Catia Andreassi; Antonella Riccio
Journal:  Trends Cell Biol       Date:  2009-08-26       Impact factor: 20.808

3.  Local synaptic signaling enhances the stochastic transport of motor-driven cargo in neurons.

Authors:  Jay Newby; Paul C Bressloff
Journal:  Phys Biol       Date:  2010-08-23       Impact factor: 2.583

4.  Single mRNA tracking in live cells.

Authors:  Hye Yoon Park; Adina R Buxbaum; Robert H Singer
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 5.  Translational control of long-lasting synaptic plasticity and memory.

Authors:  Mauro Costa-Mattioli; Wayne S Sossin; Eric Klann; Nahum Sonenberg
Journal:  Neuron       Date:  2009-01-15       Impact factor: 17.173

6.  Synapse- and stimulus-specific local translation during long-term neuronal plasticity.

Authors:  Dan Ohtan Wang; Sang Mok Kim; Yali Zhao; Hongik Hwang; Satoru K Miura; Wayne S Sossin; Kelsey C Martin
Journal:  Science       Date:  2009-05-14       Impact factor: 47.728

7.  In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons.

Authors:  Daniela C Dieterich; Jennifer J L Hodas; Géraldine Gouzer; Ilya Y Shadrin; John T Ngo; Antoine Triller; David A Tirrell; Erin M Schuman
Journal:  Nat Neurosci       Date:  2010-06-13       Impact factor: 24.884

8.  Single-RNA counting reveals alternative modes of gene expression in yeast.

Authors:  Daniel Zenklusen; Daniel R Larson; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

Review 9.  Imaging transcription in living cells.

Authors:  Xavier Darzacq; Jie Yao; Daniel R Larson; Sébastien Z Causse; Lana Bosanac; Valeria de Turris; Vera M Ruda; Timothee Lionnet; Daniel Zenklusen; Benjamin Guglielmi; Robert Tjian; Robert H Singer
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

10.  Imaging individual mRNA molecules using multiple singly labeled probes.

Authors:  Arjun Raj; Patrick van den Bogaard; Scott A Rifkin; Alexander van Oudenaarden; Sanjay Tyagi
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

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  34 in total

1.  In vitro labeling strategies for in cellulo fluorescence microscopy of single ribonucleoprotein machines.

Authors:  Thomas C Custer; Nils G Walter
Journal:  Protein Sci       Date:  2017-02-12       Impact factor: 6.725

2.  Accumulation of Polyribosomes in Dendritic Spine Heads, But Not Bases and Necks, during Memory Consolidation Depends on Cap-Dependent Translation Initiation.

Authors:  Linnaea E Ostroff; Benjamin Botsford; Sofya Gindina; Kiriana K Cowansage; Joseph E LeDoux; Eric Klann; Charles Hoeffer
Journal:  J Neurosci       Date:  2017-01-13       Impact factor: 6.167

Review 3.  Recent advances in high-performance fluorescent and bioluminescent RNA imaging probes.

Authors:  Yuqiong Xia; Ruili Zhang; Zhongliang Wang; Jie Tian; Xiaoyuan Chen
Journal:  Chem Soc Rev       Date:  2017-05-22       Impact factor: 54.564

Review 4.  Single-Cell and Single-Molecule Analysis of Gene Expression Regulation.

Authors:  Maria Vera; Jeetayu Biswas; Adrien Senecal; Robert H Singer; Hye Yoon Park
Journal:  Annu Rev Genet       Date:  2016-11-23       Impact factor: 16.830

Review 5.  Epigenetic Etiology of Intellectual Disability.

Authors:  Shigeki Iwase; Nathalie G Bérubé; Zhaolan Zhou; Nael Nadif Kasri; Elena Battaglioli; Marilyn Scandaglia; Angel Barco
Journal:  J Neurosci       Date:  2017-11-08       Impact factor: 6.167

Review 6.  RNA N6-Methyladenosine and the Regulation of RNA Localization and Function in the Brain.

Authors:  Sachithrani U Madugalle; Kate Meyer; Dan Ohtan Wang; Timothy W Bredy
Journal:  Trends Neurosci       Date:  2020-10-08       Impact factor: 13.837

Review 7.  Temporal and spatial regulation of mRNA export: Single particle RNA-imaging provides new tools and insights.

Authors:  Stephanie Heinrich; Carina Patrizia Derrer; Azra Lari; Karsten Weis; Ben Montpetit
Journal:  Bioessays       Date:  2017-01-04       Impact factor: 4.345

8.  Axon TRAP reveals learning-associated alterations in cortical axonal mRNAs in the lateral amgydala.

Authors:  Emanuela Santini; Robert Sears; Linnaea E Ostroff; Zachary Deane; Rahul N Kanadia; Joseph E LeDoux; Tenzin Lhakhang; Aristotelis Tsirigos; Adriana Heguy; Eric Klann
Journal:  Elife       Date:  2019-12-11       Impact factor: 8.140

Review 9.  Expansion microscopy: enabling single cell analysis in intact biological systems.

Authors:  Shahar Alon; Grace H Huynh; Edward S Boyden
Journal:  FEBS J       Date:  2018-07-09       Impact factor: 5.542

10.  Upregulation of eIF4E, but not other translation initiation factors, in dendritic spines during memory formation.

Authors:  Sofya Gindina; Benjamin Botsford; Kiriana Cowansage; Joseph LeDoux; Eric Klann; Charles Hoeffer; Linnaea Ostroff
Journal:  J Comp Neurol       Date:  2021-04-27       Impact factor: 3.028

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