Literature DB >> 28345687

Recent advances in high-performance fluorescent and bioluminescent RNA imaging probes.

Yuqiong Xia1, Ruili Zhang, Zhongliang Wang, Jie Tian, Xiaoyuan Chen.   

Abstract

RNA plays an important role in life processes. Imaging of messenger RNAs (mRNAs) and micro-RNAs (miRNAs) not only allows us to learn the formation and transcription of mRNAs and the biogenesis of miRNAs involved in various life processes, but also helps in detecting cancer. High-performance RNA imaging probes greatly expand our view of life processes and enhance the cancer detection accuracy. In this review, we summarize the state-of-the-art high-performance RNA imaging probes, including exogenous probes that can image RNA sequences with special modification and endogeneous probes that can directly image endogenous RNAs without special treatment. For each probe, we review its structure and imaging principle in detail. Finally, we summarize the application of mRNA and miRNA imaging probes in studying life processes as well as in detecting cancer. By correlating the structures and principles of various probes with their practical uses, we compare different RNA imaging probes and offer guidance for better utilization of the current imaging probes and the future design of higher-performance RNA imaging probes.

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Year:  2017        PMID: 28345687      PMCID: PMC5472208          DOI: 10.1039/c6cs00675b

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  155 in total

1.  Nano-flares: probes for transfection and mRNA detection in living cells.

Authors:  Dwight S Seferos; David A Giljohann; Haley D Hill; Andrew E Prigodich; Chad A Mirkin
Journal:  J Am Chem Soc       Date:  2007-11-23       Impact factor: 15.419

Review 2.  A study of microRNAs in silico and in vivo: bioimaging of microRNA biogenesis and regulation.

Authors:  Soonhag Kim; Do W Hwang; Dong S Lee
Journal:  FEBS J       Date:  2009-02-25       Impact factor: 5.542

3.  Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer.

Authors:  Murat Sunbul; Andres Jäschke
Journal:  Angew Chem Int Ed Engl       Date:  2013-10-16       Impact factor: 15.336

4.  Visualization of dynamics of single endogenous mRNA labeled in live mouse.

Authors:  Hye Yoon Park; Hyungsik Lim; Young J Yoon; Antonia Follenzi; Chiso Nwokafor; Melissa Lopez-Jones; Xiuhua Meng; Robert H Singer
Journal:  Science       Date:  2014-01-24       Impact factor: 47.728

5.  Fluorescence in situ hybridization of small non-coding RNAs.

Authors:  Valentin Vautrot; Christelle Aigueperse; Christiane Branlant; Isabelle Behm-Ansmant
Journal:  Methods Mol Biol       Date:  2015

Review 6.  Genetically encoded tools for RNA imaging in living cells.

Authors:  Anna K Rath; Andrea Rentmeister
Journal:  Curr Opin Biotechnol       Date:  2014-08-29       Impact factor: 9.740

Review 7.  Molecular imaging of microRNAs.

Authors:  Fu Wang; Gang Niu; Xiaoyuan Chen; Feng Cao
Journal:  Eur J Nucl Med Mol Imaging       Date:  2011-03-30       Impact factor: 9.236

8.  Light-up and FRET aptamer reporters; evaluating their applications for imaging transcription in eukaryotic cells.

Authors:  Muslum Ilgu; Judhajeet Ray; Lee Bendickson; Tianjiao Wang; Ivan M Geraskin; George A Kraus; Marit Nilsen-Hamilton
Journal:  Methods       Date:  2015-12-17       Impact factor: 3.608

9.  ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues.

Authors:  Ikumi Oomoto; Asuka Suzuki-Hirano; Hiroki Umeshima; Yong-Woon Han; Hiroyuki Yanagisawa; Peter Carlton; Yoshie Harada; Mineko Kengaku; Akimitsu Okamoto; Tomomi Shimogori; Dan Ohtan Wang
Journal:  Nucleic Acids Res       Date:  2015-06-22       Impact factor: 16.971

10.  High-performance probes for light and electron microscopy.

Authors:  Sarada Viswanathan; Megan E Williams; Erik B Bloss; Timothy J Stasevich; Colenso M Speer; Aljoscha Nern; Barret D Pfeiffer; Bryan M Hooks; Wei-Ping Li; Brian P English; Teresa Tian; Gilbert L Henry; John J Macklin; Ronak Patel; Charles R Gerfen; Xiaowei Zhuang; Yalin Wang; Gerald M Rubin; Loren L Looger
Journal:  Nat Methods       Date:  2015-04-27       Impact factor: 28.547

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  16 in total

1.  Fluorometric determination of ssDNA based on functionalized magnetic microparticles and DNA supersandwich self-assemblies.

Authors:  Yufei Liu; Jingfang Shangguan; Ningning He; Haixia Lv; Qianqian Wang; Suping Bai
Journal:  Mikrochim Acta       Date:  2019-10-21       Impact factor: 5.833

2.  Enzyme-free nucleic acid dual-amplification strategy combined with mimic enzyme catalytic precipitation reaction for the photoelectrochemical detection of microRNA-21.

Authors:  Yan Zhao; Xiaomeng Li; Mei-Hao Xiang; Feng Gao; Fengli Qu; Mingfang Li; Limin Lu
Journal:  Mikrochim Acta       Date:  2022-06-10       Impact factor: 5.833

Review 3.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

4.  Confocal and Super-resolution Imaging of RNA in Live Bacteria Using a Fluorogenic Silicon Rhodamine-binding Aptamer.

Authors:  Regina Wirth; Peng Gao; G Ulrich Nienhaus; Murat Sunbul; Andres Jäschke
Journal:  Bio Protoc       Date:  2020-05-05

Review 5.  Recent Advances in Nucleic Acid Targeting Probes and Supramolecular Constructs Based on Pyrene-Modified Oligonucleotides.

Authors:  Olga A Krasheninina; Darya S Novopashina; Evgeny K Apartsin; Alya G Venyaminova
Journal:  Molecules       Date:  2017-11-30       Impact factor: 4.411

6.  Programmable RNA detection with a fluorescent RNA aptamer using optimized three-way junction formation.

Authors:  Yuichi Furuhata; Mizuki Kobayashi; Ryo Maruyama; Yusuke Sato; Kurumi Makino; Tatsuo Michiue; Hiroharu Yui; Seiichi Nishizawa; Keitaro Yoshimoto
Journal:  RNA       Date:  2019-02-11       Impact factor: 4.942

7.  On-Demand Intracellular Delivery of Single Particles in Single Cells by 3D Hollow Nanoelectrodes.

Authors:  Jian-An Huang; Valeria Caprettini; Yingqi Zhao; Giovanni Melle; Nicolò Maccaferri; Lieselot Deleye; Xavier Zambrana-Puyalto; Matteo Ardini; Francesco Tantussi; Michele Dipalo; Francesco De Angelis
Journal:  Nano Lett       Date:  2019-01-23       Impact factor: 11.189

8.  Design of thiazole orange oligonucleotide probes for detection of DNA and RNA by fluorescence and duplex melting.

Authors:  Piotr Klimkowski; Sara De Ornellas; Daniel Singleton; Afaf H El-Sagheer; Tom Brown
Journal:  Org Biomol Chem       Date:  2019-06-03       Impact factor: 3.876

9.  Emerging Advances in Nanotheranostics with Intelligent Bioresponsive Systems.

Authors:  Junqing Wang; Wei Tao; Xiaoyuan Chen; Omid C Farokhzad; Gang Liu
Journal:  Theranostics       Date:  2017-09-05       Impact factor: 11.556

10.  Intracellular MicroRNA imaging using telomerase-catalyzed FRET ratioflares with signal amplification.

Authors:  Liman Xian; Haoying Ge; Feng Xu; Ning Xu; Jiangli Fan; Kun Shao; Xiaojun Peng
Journal:  Chem Sci       Date:  2019-06-07       Impact factor: 9.825

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