Literature DB >> 28052353

Temporal and spatial regulation of mRNA export: Single particle RNA-imaging provides new tools and insights.

Stephanie Heinrich1, Carina Patrizia Derrer1, Azra Lari2, Karsten Weis1, Ben Montpetit2,3.   

Abstract

The transport of messenger RNAs (mRNAs) from the nucleus to cytoplasm is an essential step in the gene expression program of all eukaryotes. Recent technological advances in the areas of RNA-labeling, microscopy, and sequencing are leading to novel insights about mRNA biogenesis and export. This includes quantitative single molecule imaging (SMI) of RNA molecules in live cells, which is providing knowledge of the spatial and temporal dynamics of the export process. As this information becomes available, it leads to new questions, the reinterpretation of previous findings, and revised models of mRNA export. In this review, we will briefly highlight some of these recent findings and discuss how live cell SMI approaches may be used to further our current understanding of mRNA export and gene expression.
© 2017 WILEY Periodicals, Inc.

Entities:  

Keywords:  MS2-MCP system; PP7-PCP system; RNA-binding protein; in vivo single molecule imaging; mRNA export; nuclear pore complex

Mesh:

Substances:

Year:  2017        PMID: 28052353      PMCID: PMC5992323          DOI: 10.1002/bies.201600124

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  136 in total

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Authors:  Antje Keppler; Horst Pick; Claudio Arrivoli; Horst Vogel; Kai Johnsson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-28       Impact factor: 11.205

2.  Nuclear export of single native mRNA molecules observed by light sheet fluorescence microscopy.

Authors:  Jan Peter Siebrasse; Tim Kaminski; Ulrich Kubitscheck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

3.  Light-sheet fluorescence microscopy for quantitative biology.

Authors:  Ernst H K Stelzer
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

Review 4.  How cells get the message: dynamic assembly and function of mRNA-protein complexes.

Authors:  Michaela Müller-McNicoll; Karla M Neugebauer
Journal:  Nat Rev Genet       Date:  2013-03-12       Impact factor: 53.242

5.  Real-time quantification of single RNA translation dynamics in living cells.

Authors:  Tatsuya Morisaki; Kenneth Lyon; Keith F DeLuca; Jennifer G DeLuca; Brian P English; Zhengjian Zhang; Luke D Lavis; Jonathan B Grimm; Sarada Viswanathan; Loren L Looger; Timothee Lionnet; Timothy J Stasevich
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

6.  GLE2, a Saccharomyces cerevisiae homologue of the Schizosaccharomyces pombe export factor RAE1, is required for nuclear pore complex structure and function.

Authors:  R Murphy; J L Watkins; S R Wente
Journal:  Mol Biol Cell       Date:  1996-12       Impact factor: 4.138

7.  Nuclear pore complex number and distribution throughout the Saccharomyces cerevisiae cell cycle by three-dimensional reconstruction from electron micrographs of nuclear envelopes.

Authors:  M Winey; D Yarar; T H Giddings; D N Mastronarde
Journal:  Mol Biol Cell       Date:  1997-11       Impact factor: 4.138

8.  Programmable RNA Tracking in Live Cells with CRISPR/Cas9.

Authors:  David A Nelles; Mark Y Fang; Mitchell R O'Connell; Jia L Xu; Sebastian J Markmiller; Jennifer A Doudna; Gene W Yeo
Journal:  Cell       Date:  2016-03-17       Impact factor: 41.582

Review 9.  Nuclear envelope: connecting structural genome organization to regulation of gene expression.

Authors:  Irina Stancheva; Eric C Schirmer
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

10.  Yeast m6A Methylated mRNAs Are Enriched on Translating Ribosomes during Meiosis, and under Rapamycin Treatment.

Authors:  Zsuzsanna Bodi; Andrew Bottley; Nathan Archer; Sean T May; Rupert G Fray
Journal:  PLoS One       Date:  2015-07-17       Impact factor: 3.240

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  11 in total

Review 1.  Emerging roles of RNA-binding proteins in diabetes and their therapeutic potential in diabetic complications.

Authors:  Curtis A Nutter; Muge N Kuyumcu-Martinez
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-12-27       Impact factor: 9.957

2.  Live-Cell Imaging of mRNP-NPC Interactions in Budding Yeast.

Authors:  Azra Lari; Farzin Farzam; Pierre Bensidoun; Marlene Oeffinger; Daniel Zenklusen; David Grunwald; Ben Montpetit
Journal:  Methods Mol Biol       Date:  2019

Review 3.  Emerging molecular functions and novel roles for the DEAD-box protein Dbp5/DDX19 in gene expression.

Authors:  Arvind Arul Nambi Rajan; Ben Montpetit
Journal:  Cell Mol Life Sci       Date:  2020-11-17       Impact factor: 9.261

Review 4.  One Ring to Rule them All? Structural and Functional Diversity in the Nuclear Pore Complex.

Authors:  Javier Fernandez-Martinez; Michael P Rout
Journal:  Trends Biochem Sci       Date:  2021-02-06       Impact factor: 14.264

Review 5.  Quality control of mRNAs at the entry of the nuclear pore: Cooperation in a complex molecular system.

Authors:  Mohammad Soheilypour; Mohammad R K Mofrad
Journal:  Nucleus       Date:  2018-01-01       Impact factor: 4.197

6.  A nuclear role for the DEAD-box protein Dbp5 in tRNA export.

Authors:  Azra Lari; Arvind Arul Nambi Rajan; Rima Sandhu; Taylor Reiter; Rachel Montpetit; Barry P Young; Chris Jr Loewen; Ben Montpetit
Journal:  Elife       Date:  2019-08-27       Impact factor: 8.140

Review 7.  RBPs Play Important Roles in Vascular Endothelial Dysfunction Under Diabetic Conditions.

Authors:  Chunbo Yang; Sophia Kelaini; Rachel Caines; Andriana Margariti
Journal:  Front Physiol       Date:  2018-09-20       Impact factor: 4.566

8.  Imaging within single NPCs reveals NXF1's role in mRNA export on the cytoplasmic side of the pore.

Authors:  Rakefet Ben-Yishay; Amir Mor; Amit Shraga; Asaf Ashkenazy-Titelman; Noa Kinor; Avital Schwed-Gross; Avi Jacob; Noga Kozer; Pramod Kumar; Yuval Garini; Yaron Shav-Tal
Journal:  J Cell Biol       Date:  2019-08-02       Impact factor: 10.539

9.  The RNA export factor Mex67 functions as a mobile nucleoporin.

Authors:  Carina Patrizia Derrer; Roberta Mancini; Pascal Vallotton; Sébastien Huet; Karsten Weis; Elisa Dultz
Journal:  J Cell Biol       Date:  2019-11-21       Impact factor: 10.539

10.  Dbp5 associates with RNA-bound Mex67 and Nab2 and its localization at the nuclear pore complex is sufficient for mRNP export and cell viability.

Authors:  Rebecca L Adams; Susan R Wente
Journal:  PLoS Genet       Date:  2020-10-01       Impact factor: 5.917

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