Literature DB >> 26051715

GTP-Dependent K-Ras Dimerization.

Serena Muratcioglu1, Tanmay S Chavan2, Benjamin C Freed3, Hyunbum Jang4, Lyuba Khavrutskii4, R Natasha Freed3, Marzena A Dyba5, Karen Stefanisko3, Sergey G Tarasov6, Attila Gursoy7, Ozlem Keskin1, Nadya I Tarasova3, Vadim Gaponenko8, Ruth Nussinov9.   

Abstract

Ras proteins recruit and activate effectors, including Raf, that transmit receptor-initiated signals. Monomeric Ras can bind Raf; however, activation of Raf requires its dimerization. It has been suspected that dimeric Ras may promote dimerization and activation of Raf. Here, we show that the GTP-bound catalytic domain of K-Ras4B, a highly oncogenic splice variant of the K-Ras isoform, forms stable homodimers. We observe two major dimer interfaces. The first, highly populated β-sheet dimer interface is at the Switch I and effector binding regions, overlapping the binding surfaces of Raf, PI3K, RalGDS, and additional effectors. This interface has to be inhibitory to such effectors. The second, helical interface also overlaps the binding sites of some effectors. This interface may promote activation of Raf. Our data reveal how Ras self-association can regulate effector binding and activity, and suggest that disruption of the helical dimer interface by drugs may abate Raf signaling in cancer.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26051715      PMCID: PMC4497850          DOI: 10.1016/j.str.2015.04.019

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  52 in total

1.  Formation of the Ras dimer is essential for Raf-1 activation.

Authors:  K Inouye; S Mizutani; H Koide; Y Kaziro
Journal:  J Biol Chem       Date:  2000-02-11       Impact factor: 5.157

2.  A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.

Authors:  Ozlem Keskin; Chung-Jung Tsai; Haim Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

Review 3.  Signaling interplay in Ras superfamily function.

Authors:  Natalia Mitin; Kent L Rossman; Channing J Der
Journal:  Curr Biol       Date:  2005-07-26       Impact factor: 10.834

Review 4.  Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

Authors:  Ozlem Keskin; Attila Gursoy; Buyong Ma; Ruth Nussinov
Journal:  Chem Rev       Date:  2008-03-21       Impact factor: 60.622

5.  A dimeric 14-3-3 protein is an essential cofactor for Raf kinase activity.

Authors:  G Tzivion; Z Luo; J Avruch
Journal:  Nature       Date:  1998-07-02       Impact factor: 49.962

Review 6.  A broad view of scaffolding suggests that scaffolding proteins can actively control regulation and signaling of multienzyme complexes through allostery.

Authors:  Ruth Nussinov; Buyong Ma; Chung-Jung Tsai
Journal:  Biochim Biophys Acta       Date:  2013-01-03

7.  Conformational states of human rat sarcoma (Ras) protein complexed with its natural ligand GTP and their role for effector interaction and GTP hydrolysis.

Authors:  Michael Spoerner; Constantin Hozsa; Johann A Poetzl; Kerstin Reiss; Petra Ganser; Matthias Geyer; Hans Robert Kalbitzer
Journal:  J Biol Chem       Date:  2010-10-11       Impact factor: 5.157

8.  (19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Authors:  James M Aramini; Keith Hamilton; Li-Chung Ma; G V T Swapna; Paul G Leonard; John E Ladbury; Robert M Krug; Gaetano T Montelione
Journal:  Structure       Date:  2014-02-27       Impact factor: 5.006

9.  PRISM: protein interactions by structural matching.

Authors:  Utkan Ogmen; Ozlem Keskin; A Selim Aytuna; Ruth Nussinov; Attila Gursoy
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  A comprehensive survey of Ras mutations in cancer.

Authors:  Ian A Prior; Paul D Lewis; Carla Mattos
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

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  93 in total

1.  Seeing is believing: Ras dimers observed in live cells.

Authors:  Mark R Philips; Channing J Der
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-30       Impact factor: 11.205

2.  The higher level of complexity of K-Ras4B activation at the membrane.

Authors:  Hyunbum Jang; Avik Banerjee; Tanmay S Chavan; Shaoyong Lu; Jian Zhang; Vadim Gaponenko; Ruth Nussinov
Journal:  FASEB J       Date:  2015-12-30       Impact factor: 5.191

Review 3.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

Review 4.  RAS-targeted therapies: is the undruggable drugged?

Authors:  Amanda R Moore; Scott C Rosenberg; Frank McCormick; Shiva Malek
Journal:  Nat Rev Drug Discov       Date:  2020-06-11       Impact factor: 84.694

5.  Lipid-Sorting Specificity Encoded in K-Ras Membrane Anchor Regulates Signal Output.

Authors:  Yong Zhou; Priyanka Prakash; Hong Liang; Kwang-Jin Cho; Alemayehu A Gorfe; John F Hancock
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

Review 6.  Inhibition of Nonfunctional Ras.

Authors:  Ruth Nussinov; Hyunbum Jang; Attila Gursoy; Ozlem Keskin; Vadim Gaponenko
Journal:  Cell Chem Biol       Date:  2021-01-12       Impact factor: 8.116

7.  Spatiotemporal Analysis of K-Ras Plasma Membrane Interactions Reveals Multiple High Order Homo-oligomeric Complexes.

Authors:  Suparna Sarkar-Banerjee; Abdallah Sayyed-Ahmad; Priyanka Prakash; Kwang-Jin Cho; M Neal Waxham; John F Hancock; Alemayehu A Gorfe
Journal:  J Am Chem Soc       Date:  2017-09-18       Impact factor: 15.419

Review 8.  Extracellular-Regulated Kinases: Signaling From Ras to ERK Substrates to Control Biological Outcomes.

Authors:  Scott T Eblen
Journal:  Adv Cancer Res       Date:  2018-03-02       Impact factor: 6.242

9.  Oncogenic K-Ras Binds to an Anionic Membrane in Two Distinct Orientations: A Molecular Dynamics Analysis.

Authors:  Priyanka Prakash; Yong Zhou; Hong Liang; John F Hancock; Alemayehu A Gorfe
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

Review 10.  A New View of Ras Isoforms in Cancers.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Mayukh Chakrabarti; Hyunbum Jang
Journal:  Cancer Res       Date:  2015-12-10       Impact factor: 12.701

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