Literature DB >> 33440168

Inhibition of Nonfunctional Ras.

Ruth Nussinov1, Hyunbum Jang2, Attila Gursoy3, Ozlem Keskin4, Vadim Gaponenko5.   

Abstract

Intuitively, functional states should be targeted; not nonfunctional ones. So why could drugging the inactive K-Ras4BG12Cwork-but drugging the inactive kinase will likely not? The reason is the distinct oncogenic mechanisms. Kinase driver mutations work by stabilizing the active state and/or destabilizing the inactive state. Either way, oncogenic kinases are mostly in the active state. Ras driver mutations work by quelling its deactivation mechanisms, GTP hydrolysis, and nucleotide exchange. Covalent inhibitors that bind to the inactive GDP-bound K-Ras4BG12C conformation can thus work. By contrast, in kinases, allosteric inhibitors work by altering the active-site conformation to favor orthosteric drugs. From the translational standpoint this distinction is vital: it expedites effective pharmaceutical development and extends the drug classification based on the mechanism of action. Collectively, here we postulate that drug action relates to blocking the mechanism of activation, not to whether the protein is in the active or inactive state.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  K-Ras4B; KRAS; dimer; drug discovery; energy landscape; inhibitor; kinases

Year:  2021        PMID: 33440168      PMCID: PMC7897307          DOI: 10.1016/j.chembiol.2020.12.012

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  208 in total

Review 1.  Folding funnels, binding funnels, and protein function.

Authors:  C J Tsai; S Kumar; B Ma; R Nussinov
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

Review 2.  The ras superfamily of small GTP-binding proteins.

Authors:  J Downward
Journal:  Trends Biochem Sci       Date:  1990-12       Impact factor: 13.807

3.  The structural basis for Ras activation of PI3Kα lipid kinase.

Authors:  Mingzhen Zhang; Hyunbum Jang; Ruth Nussinov
Journal:  Phys Chem Chem Phys       Date:  2019-06-05       Impact factor: 3.676

4.  Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms.

Authors:  Kei-Ichi Okazaki; Shoji Takada
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-04       Impact factor: 11.205

Review 5.  'Pathway drug cocktail': targeting Ras signaling based on structural pathways.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Carla Mattos
Journal:  Trends Mol Med       Date:  2013-08-15       Impact factor: 11.951

Review 6.  GEFs, GAPs, GDIs and effectors: taking a closer (3D) look at the regulation of Ras-related GTP-binding proteins.

Authors:  M Geyer; A Wittinghofer
Journal:  Curr Opin Struct Biol       Date:  1997-12       Impact factor: 6.809

7.  Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer.

Authors:  Jay B Fell; John P Fischer; Brian R Baer; James F Blake; Karyn Bouhana; David M Briere; Karin D Brown; Laurence E Burgess; Aaron C Burns; Michael R Burkard; Harrah Chiang; Mark J Chicarelli; Adam W Cook; John J Gaudino; Jill Hallin; Lauren Hanson; Dylan P Hartley; Erik J Hicken; Gary P Hingorani; Ronald J Hinklin; Macedonio J Mejia; Peter Olson; Jennifer N Otten; Susan P Rhodes; Martha E Rodriguez; Pavel Savechenkov; Darin J Smith; Niranjan Sudhakar; Francis X Sullivan; Tony P Tang; Guy P Vigers; Lance Wollenberg; James G Christensen; Matthew A Marx
Journal:  J Med Chem       Date:  2020-04-06       Impact factor: 7.446

Review 8.  RAS oncogenes: weaving a tumorigenic web.

Authors:  Yuliya Pylayeva-Gupta; Elda Grabocka; Dafna Bar-Sagi
Journal:  Nat Rev Cancer       Date:  2011-10-13       Impact factor: 60.716

9.  Challenges and Opportunities in Cancer Drug Resistance.

Authors:  Richard A Ward; Stephen Fawell; Nicolas Floc'h; Vikki Flemington; Darren McKerrecher; Paul D Smith
Journal:  Chem Rev       Date:  2020-07-21       Impact factor: 60.622

10.  High-throughput, single-particle tracking reveals nested membrane domains that dictate KRasG12D diffusion and trafficking.

Authors:  Yerim Lee; Carey Phelps; Tao Huang; Barmak Mostofian; Lei Wu; Ying Zhang; Kai Tao; Young Hwan Chang; Philip Js Stork; Joe W Gray; Daniel M Zuckerman; Xiaolin Nan
Journal:  Elife       Date:  2019-11-01       Impact factor: 8.140

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  9 in total

Review 1.  Allostery, and how to define and measure signal transduction.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Biophys Chem       Date:  2022-01-29       Impact factor: 2.352

Review 2.  Neurodevelopmental disorders, immunity, and cancer are connected.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  iScience       Date:  2022-05-30

Review 3.  Allostery: Allosteric Cancer Drivers and Innovative Allosteric Drugs.

Authors:  Ruth Nussinov; Mingzhen Zhang; Ryan Maloney; Yonglan Liu; Chung-Jung Tsai; Hyunbum Jang
Journal:  J Mol Biol       Date:  2022-04-01       Impact factor: 6.151

Review 4.  KRAS G12C inhibition and innate immune targeting.

Authors:  Tetsuo Tani; Shunsuke Kitajima; Ella B Conway; Erik H Knelson; David A Barbie
Journal:  Expert Opin Ther Targets       Date:  2021-03-28       Impact factor: 6.902

5.  How can same-gene mutations promote both cancer and developmental disorders?

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Sci Adv       Date:  2022-01-14       Impact factor: 14.136

6.  The mechanism of activation of MEK1 by B-Raf and KSR1.

Authors:  Ryan C Maloney; Mingzhen Zhang; Yonglan Liu; Hyunbum Jang; Ruth Nussinov
Journal:  Cell Mol Life Sci       Date:  2022-05-04       Impact factor: 9.207

7.  Allosteric regulation of autoinhibition and activation of c-Abl.

Authors:  Yonglan Liu; Mingzhen Zhang; Chung-Jung Tsai; Hyunbum Jang; Ruth Nussinov
Journal:  Comput Struct Biotechnol J       Date:  2022-08-11       Impact factor: 6.155

Review 8.  Progress in the therapeutic inhibition of Cdc42 signalling.

Authors:  Natasha P Murphy; Helen R Mott; Darerca Owen
Journal:  Biochem Soc Trans       Date:  2021-06-30       Impact factor: 5.407

Review 9.  Mechanism of activation and the rewired network: New drug design concepts.

Authors:  Ruth Nussinov; Mingzhen Zhang; Ryan Maloney; Chung-Jung Tsai; Bengi Ruken Yavuz; Nurcan Tuncbag; Hyunbum Jang
Journal:  Med Res Rev       Date:  2021-10-25       Impact factor: 12.388

  9 in total

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