Literature DB >> 28863262

Spatiotemporal Analysis of K-Ras Plasma Membrane Interactions Reveals Multiple High Order Homo-oligomeric Complexes.

Suparna Sarkar-Banerjee1, Abdallah Sayyed-Ahmad2, Priyanka Prakash1, Kwang-Jin Cho3, M Neal Waxham4, John F Hancock1, Alemayehu A Gorfe1.   

Abstract

Self-assembly of plasma membrane-associated Ras GTPases has major implications to the regulation of cell signaling. However, the structural basis of homo-oligomerization and the fractional distribution of oligomeric states remained undetermined. We have addressed these issues by deciphering the distribution of dimers and higher-order oligomers of K-Ras4B, the most frequently mutated Ras isoform in human cancers. We focused on the constitutively active G12V K-Ras and two of its variants, K101E and K101C/E107C, which respectively destabilize and stabilize oligomers. Using raster image correlation spectroscopy and number and brightness analysis combined with fluorescence recovery after photobleaching, fluorescence correlation spectroscopy and electron microscopy in live cells, we show that G12V K-Ras exists as a mixture of monomers, dimers and larger oligomers, while the K101E mutant is predominantly monomeric and K101C/E107C is dominated by oligomers. This observation demonstrates the ability of K-Ras to exist in multiple oligomeric states whose population can be altered by interfacial mutations. Using molecular modeling and simulations we further show that K-Ras uses two partially overlapping interfaces to form compositionally and topologically diverse oligomers. Our results thus provide the first detailed insight into the multiplicity, structure, and membrane organization of K-Ras homomers.

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Year:  2017        PMID: 28863262      PMCID: PMC5663506          DOI: 10.1021/jacs.7b06292

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  58 in total

1.  Formation of the Ras dimer is essential for Raf-1 activation.

Authors:  K Inouye; S Mizutani; H Koide; Y Kaziro
Journal:  J Biol Chem       Date:  2000-02-11       Impact factor: 5.157

2.  Two-color green fluorescent protein time-lapse imaging.

Authors:  J Ellenberg; J Lippincott-Schwartz; J F Presley
Journal:  Biotechniques       Date:  1998-11       Impact factor: 1.993

3.  Raster image correlation spectroscopy and number and brightness analysis.

Authors:  Michelle A Digman; Milka Stakic; Enrico Gratton
Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

4.  K-Ras at Anionic Membranes: Orientation, Orientation…Orientation. Recent Simulations and Experiments.

Authors:  ZhenLu Li; Shufen Cao; Matthias Buck
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

5.  Principles of assembly reveal a periodic table of protein complexes.

Authors:  Sebastian E Ahnert; Joseph A Marsh; Helena Hernández; Carol V Robinson; Sarah A Teichmann
Journal:  Science       Date:  2015-12-11       Impact factor: 47.728

6.  Computational Modeling Reveals that Signaling Lipids Modulate the Orientation of K-Ras4A at the Membrane Reflecting Protein Topology.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Structure       Date:  2017-03-09       Impact factor: 5.006

7.  Reversible Effects of Peptide Concentration and Lipid Composition on H-Ras Lipid Anchor Clustering.

Authors:  Xubo Lin; Zhenlong Li; Alemayehu A Gorfe
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

8.  All ras proteins are polyisoprenylated but only some are palmitoylated.

Authors:  J F Hancock; A I Magee; J E Childs; C J Marshall
Journal:  Cell       Date:  1989-06-30       Impact factor: 41.582

9.  A comprehensive survey of Ras mutations in cancer.

Authors:  Ian A Prior; Paul D Lewis; Carla Mattos
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

10.  Dynamics of putative raft-associated proteins at the cell surface.

Authors:  Anne K Kenworthy; Benjamin J Nichols; Catha L Remmert; Glenn M Hendrix; Mukesh Kumar; Joshua Zimmerberg; Jennifer Lippincott-Schwartz
Journal:  J Cell Biol       Date:  2004-06-01       Impact factor: 10.539

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  29 in total

Review 1.  RAS-targeted therapies: is the undruggable drugged?

Authors:  Amanda R Moore; Scott C Rosenberg; Frank McCormick; Shiva Malek
Journal:  Nat Rev Drug Discov       Date:  2020-06-11       Impact factor: 84.694

Review 2.  Oncogenic Ras Isoforms Signaling Specificity at the Membrane.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Cancer Res       Date:  2017-12-22       Impact factor: 12.701

3.  Probing the Conformational and Energy Landscapes of KRAS Membrane Orientation.

Authors:  Priyanka Prakash; Alemayehu A Gorfe
Journal:  J Phys Chem B       Date:  2019-10-09       Impact factor: 2.991

Review 4.  Deciphering lipid codes: K-Ras as a paradigm.

Authors:  Yong Zhou; John F Hancock
Journal:  Traffic       Date:  2017-12-10       Impact factor: 6.215

Review 5.  Ras and the Plasma Membrane: A Complicated Relationship.

Authors:  Yong Zhou; Priyanka Prakash; Alemayehu A Gorfe; John F Hancock
Journal:  Cold Spring Harb Perspect Med       Date:  2018-10-01       Impact factor: 6.915

6.  Conformational and Dynamical Effects of Tyr32 Phosphorylation in K-Ras: Molecular Dynamics Simulation and Markov State Models Analysis.

Authors:  Mohammed Khaled; Alemayehu Gorfe; Abdallah Sayyed-Ahmad
Journal:  J Phys Chem B       Date:  2019-08-30       Impact factor: 2.991

7.  Organization of Farnesylated, Carboxymethylated KRAS4B on Membranes.

Authors:  Eric Barklis; Andrew G Stephen; August O Staubus; Robin Lid Barklis; Ayna Alfadhli
Journal:  J Mol Biol       Date:  2019-07-19       Impact factor: 5.469

Review 8.  Membrane Dynamics in Health and Disease: Impact on Cellular Signalling.

Authors:  Pranav Adhyapak; Shobhna Kapoor
Journal:  J Membr Biol       Date:  2019-08-21       Impact factor: 1.843

9.  Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane.

Authors:  Que N Van; Cesar A López; Marco Tonelli; Troy Taylor; Ben Niu; Christopher B Stanley; Debsindhu Bhowmik; Timothy H Tran; Peter H Frank; Simon Messing; Patrick Alexander; Daniel Scott; Xiaoying Ye; Matt Drew; Oleg Chertov; Mathias Lösche; Arvind Ramanathan; Michael L Gross; Nicolas W Hengartner; William M Westler; John L Markley; Dhirendra K Simanshu; Dwight V Nissley; William K Gillette; Dominic Esposito; Frank McCormick; S Gnanakaran; Frank Heinrich; Andrew G Stephen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

Review 10.  Therapeutic targeting of RAS: New hope for drugging the "undruggable".

Authors:  Imran Khan; J Matthew Rhett; John P O'Bryan
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-10-31       Impact factor: 4.739

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