Literature DB >> 28041850

Lipid-Sorting Specificity Encoded in K-Ras Membrane Anchor Regulates Signal Output.

Yong Zhou1, Priyanka Prakash1, Hong Liang1, Kwang-Jin Cho1, Alemayehu A Gorfe2, John F Hancock3.   

Abstract

K-Ras is targeted to the plasma membrane by a C-terminal membrane anchor that comprises a farnesyl-cysteine-methyl-ester and a polybasic domain. We used quantitative spatial imaging and atomistic molecular dynamics simulations to examine molecular details of K-Ras plasma membrane binding. We found that the K-Ras anchor binds selected plasma membrane anionic lipids with defined head groups and lipid side chains. The precise amino acid sequence and prenyl group define a combinatorial code for lipid binding that extends beyond simple electrostatics; within this code lysine and arginine residues are non-equivalent and prenyl chain length modifies nascent polybasic domain lipid preferences. The code is realized by distinct dynamic tertiary structures of the anchor on the plasma membrane that govern amino acid side-chain-lipid interactions. An important consequence of this specificity is the ability of such anchors when aggregated to sort subsets of phospholipids into nanoclusters with defined lipid compositions that determine K-Ras signaling output.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  K-RAS; electron microscopy; molecular dynamics; nanoclustering; phosphatidylserine; polybasic domain

Mesh:

Substances:

Year:  2016        PMID: 28041850      PMCID: PMC5653213          DOI: 10.1016/j.cell.2016.11.059

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  47 in total

1.  Escaping free-energy minima.

Authors:  Alessandro Laio; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

2.  H-ras, K-ras, and inner plasma membrane raft proteins operate in nanoclusters with differential dependence on the actin cytoskeleton.

Authors:  Sarah J Plowman; Cornelia Muncke; Robert G Parton; John F Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-13       Impact factor: 11.205

3.  SIGNAL TRANSDUCTION. Membrane potential modulates plasma membrane phospholipid dynamics and K-Ras signaling.

Authors:  Yong Zhou; Ching-On Wong; Kwang-jin Cho; Dharini van der Hoeven; Hong Liang; Dhananiay P Thakur; Jialie Luo; Milos Babic; Konrad E Zinsmaier; Michael X Zhu; Hongzhen Hu; Kartik Venkatachalam; John F Hancock
Journal:  Science       Date:  2015-08-21       Impact factor: 47.728

Review 4.  PIP(2) and proteins: interactions, organization, and information flow.

Authors:  Stuart McLaughlin; Jiyao Wang; Alok Gambhir; Diana Murray
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

5.  Structure and dynamics of the full-length lipid-modified H-Ras protein in a 1,2-dimyristoylglycero-3-phosphocholine bilayer.

Authors:  Alemayehu A Gorfe; Michael Hanzal-Bayer; Daniel Abankwa; John F Hancock; J Andrew McCammon
Journal:  J Med Chem       Date:  2007-01-31       Impact factor: 7.446

Review 6.  Signalling ballet in space and time.

Authors:  Boris N Kholodenko; John F Hancock; Walter Kolch
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06       Impact factor: 94.444

7.  AMPK and Endothelial Nitric Oxide Synthase Signaling Regulates K-Ras Plasma Membrane Interactions via Cyclic GMP-Dependent Protein Kinase 2.

Authors:  Kwang-Jin Cho; Darren E Casteel; Priyanka Prakash; Lingxiao Tan; Dharini van der Hoeven; Angela A Salim; Choel Kim; Robert J Capon; Ernest Lacey; Shane R Cunha; Alemayehu A Gorfe; John F Hancock
Journal:  Mol Cell Biol       Date:  2016-11-28       Impact factor: 4.272

8.  All ras proteins are polyisoprenylated but only some are palmitoylated.

Authors:  J F Hancock; A I Magee; J E Childs; C J Marshall
Journal:  Cell       Date:  1989-06-30       Impact factor: 41.582

9.  Impaired retrograde membrane traffic through endosomes in a mutant CHO cell defective in phosphatidylserine synthesis.

Authors:  Shoken Lee; Yasunori Uchida; Kazuo Emoto; Masato Umeda; Osamu Kuge; Tomohiko Taguchi; Hiroyuki Arai
Journal:  Genes Cells       Date:  2012-07-02       Impact factor: 1.891

10.  A comprehensive survey of Ras mutations in cancer.

Authors:  Ian A Prior; Paul D Lewis; Carla Mattos
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

View more
  109 in total

Review 1.  Posttranslational Modifications of RAS Proteins.

Authors:  Ian Ahearn; Mo Zhou; Mark R Philips
Journal:  Cold Spring Harb Perspect Med       Date:  2018-11-01       Impact factor: 6.915

2.  Ras and Rap Signal Bidirectional Synaptic Plasticity via Distinct Subcellular Microdomains.

Authors:  Lei Zhang; Peng Zhang; Guangfu Wang; Huaye Zhang; Yajun Zhang; Yilin Yu; Mingxu Zhang; Jian Xiao; Piero Crespo; Johannes W Hell; Li Lin; Richard L Huganir; J Julius Zhu
Journal:  Neuron       Date:  2018-04-26       Impact factor: 17.173

3.  FLIM-FRET Analysis of Ras Nanoclustering and Membrane-Anchorage.

Authors:  Hanna Parkkola; Farid Ahmad Siddiqui; Christina Oetken-Lindholm; Daniel Abankwa
Journal:  Methods Mol Biol       Date:  2021

4.  Super-Resolution Imaging and Spatial Analysis of RAS on Intact Plasma Membrane Sheets.

Authors:  Yong Zhou; John F Hancock
Journal:  Methods Mol Biol       Date:  2021

5.  Ras Variant Biology and Contributions to Human Disease.

Authors:  Ian Prior
Journal:  Methods Mol Biol       Date:  2021

6.  Nanopore-mediated protein delivery enabling three-color single-molecule tracking in living cells.

Authors:  Zhongwen Chen; Yuhong Cao; Chun-Wei Lin; Steven Alvarez; Dongmyung Oh; Peidong Yang; Jay T Groves
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

Review 7.  RAS Proteins and Their Regulators in Human Disease.

Authors:  Dhirendra K Simanshu; Dwight V Nissley; Frank McCormick
Journal:  Cell       Date:  2017-06-29       Impact factor: 41.582

8.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

Review 9.  Oncogenic Ras Isoforms Signaling Specificity at the Membrane.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Cancer Res       Date:  2017-12-22       Impact factor: 12.701

10.  Spatiotemporal Analysis of K-Ras Plasma Membrane Interactions Reveals Multiple High Order Homo-oligomeric Complexes.

Authors:  Suparna Sarkar-Banerjee; Abdallah Sayyed-Ahmad; Priyanka Prakash; Kwang-Jin Cho; M Neal Waxham; John F Hancock; Alemayehu A Gorfe
Journal:  J Am Chem Soc       Date:  2017-09-18       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.