Literature DB >> 6580628

Structure-specific model of hemoglobin cooperativity.

A W Lee, M Karplus.   

Abstract

A generalization of the Szabo-Karplus statistical mechanical model for hemoglobin cooperativity is formulated. The model fits the available thermodynamic and spectroscopic data with assumptions that are consistent with structural results and empirical energy function calculations. It provides a mechanism of hemoglobin cooperativity that is a generalization of the proposals of Monod, Wyman, and Changeux and of Perutz. The role of nonsalt-bridge related sources of constraints on ligand affinity and the mode of salt-bridge coupling to tertiary-quaternary structural changes are examined within the framework of the model. Analysis of proton release data for a range of pH values indicates that a pH-independent part of cooperativity must be present. The pH dependence of the first and last Adair constants point to partial linkage of salt bridges to ligation in the deoxy state and to a destabilized intra-beta-chain salt bridge in the unliganded oxy state.

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Year:  1983        PMID: 6580628      PMCID: PMC389991          DOI: 10.1073/pnas.80.23.7055

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  The three-state model: a minimal allosteric description of homotropic and heterotropic effects in the binding of ligands to hemoglobin.

Authors:  A P Minton; K Imai
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

2.  The binding of a spin-labeled triphosphate to hemoglobin.

Authors:  R T Ogata; H M McConnell
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1972

3.  Stereochemistry of cooperative effects in hemoglobin.

Authors:  M F Perutz; L F TenEyck
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1972

4.  Direct measurement of the pK values of an alkaline Bohr group in human hemoglobin.

Authors:  J V Kilmartin; J J Breen; G C Roberts; C Ho
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

5.  Intermediate structure of normal human haemoglobin: methaemoglobin in the deoxy quaternary conformation.

Authors:  L Anderson
Journal:  J Mol Biol       Date:  1973-09-25       Impact factor: 5.469

6.  Extensions of the allosteric model for haemoglobin.

Authors:  S J Edelstein
Journal:  Nature       Date:  1971-03-26       Impact factor: 49.962

7.  A mathematical model for structure-function relations in hemoglobin.

Authors:  A Szabo; M Karplus
Journal:  J Mol Biol       Date:  1972-12-14       Impact factor: 5.469

8.  Haemoglobin Hiroshima and the mechanism of the alkaline Bohr effect.

Authors:  M F Perutz; P Pulsinelli; L T Eyck; J V Kilmartin; S Shibata; I Iuchi; T Miyaji; H B Hamilton
Journal:  Nat New Biol       Date:  1971-08-04

9.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

10.  The effect of potassium chloride on the Bohr effect of human hemoglobin.

Authors:  H S Rollema; S H de Bruin; L H Janssen; G A van Os
Journal:  J Biol Chem       Date:  1975-02-25       Impact factor: 5.157

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  22 in total

1.  New insights into allosteric mechanisms from trapping unstable protein conformations in silica gels.

Authors:  Cristiano Viappiani; Stefano Bettati; Stefano Bruno; Luca Ronda; Stefania Abbruzzetti; Andrea Mozzarelli; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

Review 2.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

3.  Identification of the intermediate allosteric species in human hemoglobin reveals a molecular code for cooperative switching.

Authors:  M A Daugherty; M A Shea; J A Johnson; V J LiCata; G J Turner; G K Ackers
Journal:  Proc Natl Acad Sci U S A       Date:  1991-02-15       Impact factor: 11.205

4.  The allosteric mechanism of the chaperonin GroEL: a dynamic analysis.

Authors:  J Ma; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

5.  Unsuspected pathway of the allosteric transition in hemoglobin.

Authors:  Stefan Fischer; Kenneth W Olsen; Kwangho Nam; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-17       Impact factor: 11.205

6.  Experiments on Hemoglobin in Single Crystals and Silica Gels Distinguish among Allosteric Models.

Authors:  Eric R Henry; Andrea Mozzarelli; Cristiano Viappiani; Stefania Abbruzzetti; Stefano Bettati; Luca Ronda; Stefano Bruno; William A Eaton
Journal:  Biophys J       Date:  2015-05-30       Impact factor: 4.033

7.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

8.  Allosteric interpretation of the measurement of cooperative free energy in cyanomethemoglobin.

Authors:  F A Ferrone
Journal:  Proc Natl Acad Sci U S A       Date:  1986-09       Impact factor: 11.205

9.  Spontaneous quaternary and tertiary T-R transitions of human hemoglobin in molecular dynamics simulation.

Authors:  Jochen S Hub; Marcus B Kubitzki; Bert L de Groot
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

10.  Oxygen-organophosphate linkage in hemoglobin A. The double hump effect.

Authors:  J Kister; C Poyart; S J Edelstein
Journal:  Biophys J       Date:  1987-10       Impact factor: 4.033

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