Literature DB >> 26018168

Innovations in Undergraduate Science Education: Going Viral.

Graham F Hatfull1.   

Abstract

Bacteriophage discovery and genomics provides a powerful and effective platform for integrating missions in research and education. Implementation of the Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) program facilitates a broad impact by including a diverse array of schools, faculty, and students. The program generates new insights into the diversity and evolution of the bacteriophage population and presents a model for introducing first-year undergraduate students to discovery-based research experiences.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26018168      PMCID: PMC4524241          DOI: 10.1128/JVI.03003-14

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  17 in total

Review 1.  Bacteriophages: evolution of the majority.

Authors:  Roger W Hendrix
Journal:  Theor Popul Biol       Date:  2002-06       Impact factor: 1.570

Review 2.  Viral metagenomics.

Authors:  Robert A Edwards; Forest Rohwer
Journal:  Nat Rev Microbiol       Date:  2005-06       Impact factor: 60.633

3.  Inquiry learning. Teaching scientific inquiry.

Authors:  David I Hanauer; Deborah Jacobs-Sera; Marisa L Pedulla; Steven G Cresawn; Roger W Hendrix; Graham F Hatfull
Journal:  Science       Date:  2006-12-22       Impact factor: 47.728

4.  Non-STEM undergraduates become enthusiastic phage-hunters.

Authors:  Steven M Caruso; James Sandoz; Jessica Kelsey
Journal:  CBE Life Sci Educ       Date:  2009       Impact factor: 3.325

5.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

6.  Rapid assessment of drug susceptibilities of Mycobacterium tuberculosis by means of luciferase reporter phages.

Authors:  W R Jacobs; R G Barletta; R Udani; J Chan; G Kalkut; G Sosne; T Kieser; G J Sarkis; G F Hatfull; B R Bloom
Journal:  Science       Date:  1993-05-07       Impact factor: 47.728

7.  Classroom-based science research at the introductory level: changes in career choices and attitude.

Authors:  Melinda Harrison; David Dunbar; Lisa Ratmansky; Kimberly Boyd; David Lopatto
Journal:  CBE Life Sci Educ       Date:  2011       Impact factor: 3.325

8.  Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform.

Authors:  Graham F Hatfull; Marisa L Pedulla; Deborah Jacobs-Sera; Pauline M Cichon; Amy Foley; Michael E Ford; Rebecca M Gonda; Jennifer M Houtz; Andrew J Hryckowian; Vanessa A Kelchner; Swathi Namburi; Kostandin V Pajcini; Mark G Popovich; Donald T Schleicher; Brian Z Simanek; Alexis L Smith; Gina M Zdanowicz; Vanaja Kumar; Craig L Peebles; William R Jacobs; Jeffrey G Lawrence; Roger W Hendrix
Journal:  PLoS Genet       Date:  2006-06-09       Impact factor: 5.917

9.  BRED: a simple and powerful tool for constructing mutant and recombinant bacteriophage genomes.

Authors:  Laura J Marinelli; Mariana Piuri; Zuzana Swigonová; Amrita Balachandran; Lauren M Oldfield; Julia C van Kessel; Graham F Hatfull
Journal:  PLoS One       Date:  2008-12-17       Impact factor: 3.240

10.  Measuring Networking as an Outcome Variable in Undergraduate Research Experiences.

Authors:  David I Hanauer; Graham Hatfull
Journal:  CBE Life Sci Educ       Date:  2015       Impact factor: 3.325

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  21 in total

1.  PhagesDB: the actinobacteriophage database.

Authors:  Daniel A Russell; Graham F Hatfull
Journal:  Bioinformatics       Date:  2017-03-01       Impact factor: 6.937

2.  Scientific Discovery Games for Biomedical Research.

Authors:  Rhiju Das; Benjamin Keep; Peter Washington; Ingmar H Riedel-Kruse
Journal:  Annu Rev Biomed Data Sci       Date:  2019-07

3.  Tightening Bonds in Latin America Through Phage Discovery.

Authors:  Florencia Payaslian; Victoria Gradaschi; Liliana Rondón Salazar; Maria Eugenia Dieterle; Estefanía Urdániz; Matias Di Paola; Fabio Zon; Mariana Allievi; Carmen Sanchez Rivas; Raúl Ricardo Raya; Alejandro Reyes; Mariana Piuri
Journal:  Phage (New Rochelle)       Date:  2021-03-17

4.  The Virulence Index: A Metric for Quantitative Analysis of Phage Virulence.

Authors:  Zachary J Storms; Matthew R Teel; Kevin Mercurio; Dominic Sauvageau
Journal:  Phage (New Rochelle)       Date:  2020-02-25

5.  Isolation and Characterization of vB_MsmS_Celfi: A New Mycobacterium tuberculosis Bacteriophage.

Authors:  Florencia Payaslian; Victoria Gradaschi; Liliana Rondón Salazar; Maria Eugenia Dieterle; Estefanía Urdániz; Matias Di Paola; José Peña Cárcamo; Fabio Zon; Ezequiel Sosa; Darío Fernandez Do Porto; Matthew Dunne; Pauline Goeller; Jochen Klumpp; Raúl Ricardo Raya; Alejandro Reyes; Mariana Piuri
Journal:  Phage (New Rochelle)       Date:  2021-03-17

Review 6.  Mycobacteriophages.

Authors:  Graham F Hatfull
Journal:  Microbiol Spectr       Date:  2018-10

7.  Mycobacteriophages as Genomic Engineers and Anti-infective Weapons.

Authors:  Mark R Sullivan; Eric J Rubin; Charles L Dulberger
Journal:  mBio       Date:  2021-05-18       Impact factor: 7.867

8.  Complete Genome Sequence of Arthrobacter sp. ATCC 21022, a Host for Bacteriophage Discovery.

Authors:  Daniel A Russell; Graham F Hatfull
Journal:  Genome Announc       Date:  2016-03-24

9.  Genome Sequences of Gordonia terrae Bacteriophages Phinally and Vivi2.

Authors:  Welkin H Pope; Kaitlyn C Anderson; Charu Arora; Michael E Bortz; George Burnet; David H Conover; Gina M D'Incau; Jonathan A Ghobrial; Audrey L Jonas; Emily J Migdal; Nicole L Rote; Brian A German; Jill E McDonnell; Nadia Mezghani; Claire E Schafer; Paige K Thompson; Megan C Ulbrich; Victor J Yu; Emily C Furbee; Sarah R Grubb; Marcie H Warner; Matthew T Montgomery; Rebecca A Garlena; Daniel A Russell; Deborah Jacobs-Sera; Graham F Hatfull
Journal:  Genome Announc       Date:  2016-08-18

10.  Scaling Up: Adapting a Phage-Hunting Course to Increase Participation of First-Year Students in Research.

Authors:  Nancy L Staub; Marianne Poxleitner; Amanda Braley; Helen Smith-Flores; Christine M Pribbenow; Leslie Jaworski; David Lopatto; Kirk R Anders
Journal:  CBE Life Sci Educ       Date:  2016       Impact factor: 3.325

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