Literature DB >> 15886693

Viral metagenomics.

Robert A Edwards1, Forest Rohwer.   

Abstract

Viruses, most of which infect microorganisms, are the most abundant biological entities on the planet. Identifying and measuring the community dynamics of viruses in the environment is complicated because less than one percent of microbial hosts have been cultivated. Also, there is no single gene that is common to all viral genomes, so total uncultured viral diversity cannot be monitored using approaches analogous to ribosomal DNA profiling. Metagenomic analyses of uncultured viral communities circumvent these limitations and can provide insights into the composition and structure of environmental viral communities.

Mesh:

Year:  2005        PMID: 15886693     DOI: 10.1038/nrmicro1163

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  317 in total

1.  Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses.

Authors:  Chris Lauber; Alexander E Gorbalenya
Journal:  J Virol       Date:  2012-01-25       Impact factor: 5.103

2.  Diversity and abundance of single-stranded DNA viruses in human feces.

Authors:  Min-Soo Kim; Eun-Jin Park; Seong Woon Roh; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

3.  Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere.

Authors:  Tae Woong Whon; Min-Soo Kim; Seong Woon Roh; Na-Ri Shin; Hae-Won Lee; Jin-Woo Bae
Journal:  J Virol       Date:  2012-05-23       Impact factor: 5.103

4.  Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly.

Authors:  Joanne B Emerson; Brian C Thomas; Karen Andrade; Eric E Allen; Karla B Heidelberg; Jillian F Banfield
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

5.  Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes.

Authors:  Huiquan Liu; Yanping Fu; Daohong Jiang; Guoqing Li; Jiatao Xie; Jiasen Cheng; Youliang Peng; Said A Ghabrial; Xianhong Yi
Journal:  J Virol       Date:  2010-09-01       Impact factor: 5.103

6.  Assessment of soil fungal communities using pyrosequencing.

Authors:  Young Woon Lim; Byung Kwon Kim; Changmu Kim; Hack Sung Jung; Bong-Soo Kim; Jae-Hak Lee; Jongsik Chun
Journal:  J Microbiol       Date:  2010-06-23       Impact factor: 3.422

7.  Metagenomic analysis of the viral communities in fermented foods.

Authors:  Eun-Jin Park; Kyoung-Ho Kim; Guy C J Abell; Min-Soo Kim; Seong Woon Roh; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

8.  Genome analysis of deep-sea thermophilic phage D6E.

Authors:  Yiqian Wang; Xiaobo Zhang
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

9.  Detection of a new species of torque teno mini virus from the gingival epithelium of patients with periodontitis.

Authors:  Yu Zhang; Fei Li; Xi Chen; Tong-Ling Shan; Xu-Tao Deng; Eric Delwart; Xi-Ping Feng
Journal:  Virus Genes       Date:  2017-09-02       Impact factor: 2.332

10.  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures.

Authors:  Tracey Allen K Freitas; Po-E Li; Matthew B Scholz; Patrick S G Chain
Journal:  Nucleic Acids Res       Date:  2015-03-12       Impact factor: 16.971

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