Literature DB >> 28365761

PhagesDB: the actinobacteriophage database.

Daniel A Russell, Graham F Hatfull.   

Abstract

The Actinobacteriophage Database (PhagesDB) is a comprehensive, interactive, database-backed website that collects and shares information related to the discovery, characterization and genomics of viruses that infect Actinobacterial hosts. To date, more than 8000 bacteriophages-including over 1600 with sequenced genomes-have been entered into the database. PhagesDB plays a crucial role in organizing the discoveries of phage biologists around the world-including students in the SEA-PHAGES program-and has been cited in over 50 peer-reviewed articles. Availability and Implementation: http://phagesdb.org/. Contact: gfh@pitt.edu.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

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Year:  2017        PMID： 28365761      PMCID： PMC5860397          DOI： 10.1093/bioinformatics/btw711

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Origins of highly mosaic mycobacteriophage genomes.

Authors:  Marisa L Pedulla; Michael E Ford; Jennifer M Houtz; Tharun Karthikeyan; Curtis Wadsworth; John A Lewis; Debbie Jacobs-Sera; Jacob Falbo; Joseph Gross; Nicholas R Pannunzio; William Brucker; Vanaja Kumar; Jayasankar Kandasamy; Lauren Keenan; Svetsoslav Bardarov; Jordan Kriakov; Jeffrey G Lawrence; William R Jacobs; Roger W Hendrix; Graham F Hatfull
Journal:  Cell       Date:  2003-04-18       Impact factor: 41.582

2.  Inquiry learning. Teaching scientific inquiry.

Authors:  David I Hanauer; Deborah Jacobs-Sera; Marisa L Pedulla; Steven G Cresawn; Roger W Hendrix; Graham F Hatfull
Journal:  Science       Date:  2006-12-22       Impact factor: 47.728

3.  DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics.

Authors:  G F Hatfull; G J Sarkis
Journal:  Mol Microbiol       Date:  1993-02       Impact factor: 3.501

4.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

Review 5.  Innovations in Undergraduate Science Education: Going Viral.

Authors:  Graham F Hatfull
Journal:  J Virol       Date:  2015-05-27       Impact factor: 5.103

6.  Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform.

Authors:  Graham F Hatfull; Marisa L Pedulla; Deborah Jacobs-Sera; Pauline M Cichon; Amy Foley; Michael E Ford; Rebecca M Gonda; Jennifer M Houtz; Andrew J Hryckowian; Vanessa A Kelchner; Swathi Namburi; Kostandin V Pajcini; Mark G Popovich; Donald T Schleicher; Brian Z Simanek; Alexis L Smith; Gina M Zdanowicz; Vanaja Kumar; Craig L Peebles; William R Jacobs; Jeffrey G Lawrence; Roger W Hendrix
Journal:  PLoS Genet       Date:  2006-06-09       Impact factor: 5.917

7.  A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.

Authors:  Tuajuanda C Jordan; Sandra H Burnett; Susan Carson; Steven M Caruso; Kari Clase; Randall J DeJong; John J Dennehy; Dee R Denver; David Dunbar; Sarah C R Elgin; Ann M Findley; Chris R Gissendanner; Urszula P Golebiewska; Nancy Guild; Grant A Hartzog; Wendy H Grillo; Gail P Hollowell; Lee E Hughes; Allison Johnson; Rodney A King; Lynn O Lewis; Wei Li; Frank Rosenzweig; Michael R Rubin; Margaret S Saha; James Sandoz; Christopher D Shaffer; Barbara Taylor; Louise Temple; Edwin Vazquez; Vassie C Ware; Lucia P Barker; Kevin W Bradley; Deborah Jacobs-Sera; Welkin H Pope; Daniel A Russell; Steven G Cresawn; David Lopatto; Cheryl P Bailey; Graham F Hatfull
Journal:  MBio       Date:  2014-02-04       Impact factor: 7.867
  7 in total
  102 in total

1.  Mycobacteriophage ZoeJ: A broad host-range close relative of mycobacteriophage TM4.

Authors:  Rebekah M Dedrick; Carlos A Guerrero Bustamante; Rebecca A Garlena; R Seth Pinches; Kathleen Cornely; Graham F Hatfull
Journal:  Tuberculosis (Edinb)       Date:  2019-01-16       Impact factor: 3.131

Review 2.  Impact of Xenogeneic Silencing on Phage-Host Interactions.

Authors:  Eugen Pfeifer; Max Hünnefeld; Ovidiu Popa; Julia Frunzke
Journal:  J Mol Biol       Date:  2019-02-21       Impact factor: 5.469

3.  Mycobacteriophage Fruitloop gp52 inactivates Wag31 (DivIVA) to prevent heterotypic superinfection.

Authors:  Ching-Chung Ko; Graham F Hatfull
Journal:  Mol Microbiol       Date:  2018-04-03       Impact factor: 3.501

Review 4.  Mycobacteriophages.

Authors:  Graham F Hatfull
Journal:  Microbiol Spectr       Date:  2018-10

Review 5.  Actinobacteriophages: Genomics, Dynamics, and Applications.

Authors:  Graham F Hatfull
Journal:  Annu Rev Virol       Date:  2020-09-29       Impact factor: 10.431

6.  Interaction dynamics and virus-host range for estuarine actinophages captured by epicPCR.

Authors:  Eric G Sakowski; Keith Arora-Williams; Funing Tian; Ahmed A Zayed; Olivier Zablocki; Matthew B Sullivan; Sarah P Preheim
Journal:  Nat Microbiol       Date:  2021-02-25       Impact factor: 17.745

7.  Cocultivation of an ultrasmall environmental parasitic bacterium with lytic ability against bacteria associated with wastewater foams.

Authors:  Steven Batinovic; Jayson J A Rose; Julian Ratcliffe; Robert J Seviour; Steve Petrovski
Journal:  Nat Microbiol       Date:  2021-04-29       Impact factor: 17.745

8.  Long-run bacteria-phage coexistence dynamics under natural habitat conditions in an environmental biotechnology system.

Authors:  Leandro D Guerrero; María V Pérez; Esteban Orellana; Mariana Piuri; Cecilia Quiroga; Leonardo Erijman
Journal:  ISME J       Date:  2020-10-16       Impact factor: 10.302

9.  MultiPhATE2: code for functional annotation and comparison of phage genomes.

Authors:  Carol L Ecale Zhou; Jeffrey Kimbrel; Robert Edwards; Katelyn McNair; Brian A Souza; Stephanie Malfatti
Journal:  G3 (Bethesda)       Date:  2021-05-07       Impact factor: 3.154

10.  Increased whiB7 expression and antibiotic resistance in Mycobacterium chelonae carrying two prophages.

Authors:  Jaycee Cushman; Emma Freeman; Sarah McCallister; Anna Schumann; Keith W Hutchison; Sally D Molloy
Journal:  BMC Microbiol       Date:  2021-06-09       Impact factor: 3.605
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