Literature DB >> 34308269

Scientific Discovery Games for Biomedical Research.

Rhiju Das1, Benjamin Keep2, Peter Washington3, Ingmar H Riedel-Kruse3.   

Abstract

Over the past decade, scientific discovery games (SDGs) have emerged as a viable approach for biomedical research, engaging hundreds of thousands of volunteer players and resulting in numerous scientific publications. After describing the origins of this novel research approach, we review the scientific output of SDGs across molecular modeling, sequence alignment, neuroscience, pathology, cellular biology, genomics, and human cognition. We find compelling results and technical innovations arising in problem-oriented games such as Foldit and Eterna and in data-oriented games such as EyeWire and Project Discovery. We discuss emergent properties of player communities shared across different projects, including the diversity of communities and the extraordinary contributions of some volunteers, such as paper writing. Finally, we highlight connections to artificial intelligence, biological cloud laboratories, new game genres, science education, and open science that may drive the next generation of SDGs.

Entities:  

Keywords:  citizen science; cloud laboratory; crowdsourcing; interactive media; scientific discovery games; video games

Year:  2019        PMID: 34308269      PMCID: PMC8297398          DOI: 10.1146/annurev-biodatasci-072018-021139

Source DB:  PubMed          Journal:  Annu Rev Biomed Data Sci        ISSN: 2574-3414


  83 in total

1.  Mastering the game of Go with deep neural networks and tree search.

Authors:  David Silver; Aja Huang; Chris J Maddison; Arthur Guez; Laurent Sifre; George van den Driessche; Julian Schrittwieser; Ioannis Antonoglou; Veda Panneershelvam; Marc Lanctot; Sander Dieleman; Dominik Grewe; John Nham; Nal Kalchbrenner; Ilya Sutskever; Timothy Lillicrap; Madeleine Leach; Koray Kavukcuoglu; Thore Graepel; Demis Hassabis
Journal:  Nature       Date:  2016-01-28       Impact factor: 49.962

2.  RNA design rules from a massive open laboratory.

Authors:  Jeehyung Lee; Wipapat Kladwang; Minjae Lee; Daniel Cantu; Martin Azizyan; Hanjoo Kim; Alex Limpaecher; Sungroh Yoon; Adrien Treuille; Rhiju Das
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

3.  Scientific rigor through videogames.

Authors:  Adrien Treuille; Rhiju Das
Journal:  Trends Biochem Sci       Date:  2014-10-06       Impact factor: 13.807

4.  Power to the People: Addressing Big Data Challenges in Neuroscience by Creating a New Cadre of Citizen Neuroscientists.

Authors:  Jane Roskams; Zoran Popović
Journal:  Neuron       Date:  2016-11-02       Impact factor: 17.173

Review 5.  A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.

Authors:  John Moult
Journal:  Curr Opin Struct Biol       Date:  2005-06       Impact factor: 6.809

6.  Crystal structure of a monomeric retroviral protease solved by protein folding game players.

Authors:  Firas Khatib; Frank DiMaio; Seth Cooper; Maciej Kazmierczyk; Miroslaw Gilski; Szymon Krzywda; Helena Zabranska; Iva Pichova; James Thompson; Zoran Popović; Mariusz Jaskolski; David Baker
Journal:  Nat Struct Mol Biol       Date:  2011-09-18       Impact factor: 15.369

7.  Open Labware: 3-D printing your own lab equipment.

Authors:  Tom Baden; Andre Maia Chagas; Gregory J Gage; Greg Gage; Timothy C Marzullo; Timothy Marzullo; Lucia L Prieto-Godino; Thomas Euler
Journal:  PLoS Biol       Date:  2015-03-20       Impact factor: 8.029

8.  Open-Phylo: a customizable crowd-computing platform for multiple sequence alignment.

Authors:  Daniel Kwak; Alfred Kam; David Becerra; Qikuan Zhou; Adam Hops; Eleyine Zarour; Arthur Kam; Luis Sarmenta; Mathieu Blanchette; Jérôme Waldispühl
Journal:  Genome Biol       Date:  2013       Impact factor: 13.583

9.  Online citizen science games: Opportunities for the biological sciences.

Authors:  Vickie Curtis
Journal:  Appl Transl Genom       Date:  2014-08-09

10.  Plasmodium species differentiation by non-expert on-line volunteers for remote malaria field diagnosis.

Authors:  Alejandra Ortiz-Ruiz; María Postigo; Sara Gil-Casanova; Daniel Cuadrado; José M Bautista; José Miguel Rubio; Miguel Luengo-Oroz; María Linares
Journal:  Malar J       Date:  2018-01-30       Impact factor: 2.979

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  2 in total

1.  Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches.

Authors:  Johan O L Andreasson; Michael R Gotrik; Michelle J Wu; Hannah K Wayment-Steele; Wipapat Kladwang; Fernando Portela; Roger Wellington-Oguri; Rhiju Das; William J Greenleaf
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-26       Impact factor: 12.779

2.  A Brave New World: Virtual Reality and Augmented Reality in Systems Biology.

Authors:  Berk Turhan; Zeynep H Gümüş
Journal:  Front Bioinform       Date:  2022-04-06
  2 in total

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