Literature DB >> 26005848

Experience-dependent DNA methylation regulates plasticity in the developing visual cortex.

Paola Tognini1, Debora Napoli2, Jonida Tola1, Davide Silingardi1, Floriana Della Ragione3, Maurizio D'Esposito3, Tommaso Pizzorusso4.   

Abstract

DNA methylation is an epigenetic repressor mark for transcription dynamically regulated in neurons. We analyzed visual experience regulation of DNA methylation in mice and its involvement in ocular dominance plasticity of the developing visual cortex. Monocular deprivation modulated the expression of factors controlling DNA methylation and exerted opposite effects on DNA methylation and hydroxymethylation in specific plasticity genes. Inhibition of DNA methyltrasferase (DNMT) blocked molecular and functional effects of monocular deprivation, partially reversing the monocular deprivation transcriptional program.

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Year:  2015        PMID： 26005848     DOI： 10.1038/nn.4026

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN： 1097-6256            Impact factor:   24.884


  29 in total

1.  The GLIB technique for genome-wide mapping of 5-hydroxymethylcytosine.

Authors:  William A Pastor; Yun Huang; Hope R Henderson; Suneet Agarwal; Anjana Rao
Journal:  Nat Protoc       Date:  2012-09-27       Impact factor: 13.491

Review 2.  DNA methylation and its basic function.

Authors:  Lisa D Moore; Thuc Le; Guoping Fan
Journal:  Neuropsychopharmacology       Date:  2012-07-11       Impact factor: 7.853

3.  DNA methylation-related chromatin remodeling in activity-dependent BDNF gene regulation.

Authors:  Keri Martinowich; Daisuke Hattori; Hao Wu; Shaun Fouse; Fei He; Yan Hu; Guoping Fan; Yi E Sun
Journal:  Science       Date:  2003-10-31       Impact factor: 47.728

4.  A biological function for the neuronal activity-dependent component of Bdnf transcription in the development of cortical inhibition.

Authors:  Elizabeth J Hong; Alejandra E McCord; Michael E Greenberg
Journal:  Neuron       Date:  2008-11-26       Impact factor: 17.173

5.  Ten-eleven translocation 1 (Tet1) is regulated by O-linked N-acetylglucosamine transferase (Ogt) for target gene repression in mouse embryonic stem cells.

Authors:  Feng-Tao Shi; Hyeung Kim; Weisi Lu; Quanyuan He; Dan Liu; Margaret A Goodell; Ma Wan; Zhou Songyang
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

6.  Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.

Authors:  Wei Xu; Hui Yang; Ying Liu; Ying Yang; Ping Wang; Se-Hee Kim; Shinsuke Ito; Chen Yang; Pu Wang; Meng-Tao Xiao; Li-xia Liu; Wen-qing Jiang; Jing Liu; Jin-ye Zhang; Bin Wang; Stephen Frye; Yi Zhang; Yan-hui Xu; Qun-ying Lei; Kun-Liang Guan; Shi-min Zhao; Yue Xiong
Journal:  Cancer Cell       Date:  2011-01-18       Impact factor: 38.585

7.  Phosphorylation of TET proteins is regulated via O-GlcNAcylation by the O-linked N-acetylglucosamine transferase (OGT).

Authors:  Christina Bauer; Klaus Göbel; Nagarjuna Nagaraj; Christian Colantuoni; Mengxi Wang; Udo Müller; Elisabeth Kremmer; Andrea Rottach; Heinrich Leonhardt
Journal:  J Biol Chem       Date:  2015-01-07       Impact factor: 5.157

8.  GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Authors:  Ruben Nogales-Cadenas; Pedro Carmona-Saez; Miguel Vazquez; Cesar Vicente; Xiaoyuan Yang; Francisco Tirado; Jose María Carazo; Alberto Pascual-Montano
Journal:  Nucleic Acids Res       Date:  2009-05-22       Impact factor: 16.971

9.  DNA methylation regulates associative reward learning.

Authors:  Jeremy J Day; Daniel Childs; Mikael C Guzman-Karlsson; Mercy Kibe; Jerome Moulden; Esther Song; Absar Tahir; J David Sweatt
Journal:  Nat Neurosci       Date:  2013-08-25       Impact factor: 24.884

10.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962
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  22 in total

Review 1.  Drugging the methylome: DNA methylation and memory.

Authors:  Andrew J Kennedy; J David Sweatt
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-02-25       Impact factor: 8.250

2.  Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression.

Authors:  Carolyn J Vivian; Amanda E Brinker; Stefan Graw; Devin C Koestler; Christophe Legendre; Gerald C Gooden; Bodour Salhia; Danny R Welch
Journal:  Cancer Res       Date:  2017-06-29       Impact factor: 12.701

3.  MiR-29 coordinates age-dependent plasticity brakes in the adult visual cortex.

Authors:  Alessandro Cellerino; Tommaso Pizzorusso; Debora Napoli; Leonardo Lupori; Raffaele Mazziotti; Giulia Sagona; Sara Bagnoli; Muntaha Samad; Erika Kelmer Sacramento; Joanna Kirkpartick; Elena Putignano; Siwei Chen; Eva Terzibasi Tozzini; Paola Tognini; Pierre Baldi; Jessica Cf Kwok
Journal:  EMBO Rep       Date:  2020-10-07       Impact factor: 8.807

Review 4.  The landscape of DNA methylation amid a perfect storm of autism aetiologies.

Authors:  Annie Vogel Ciernia; Janine LaSalle
Journal:  Nat Rev Neurosci       Date:  2016-05-06       Impact factor: 34.870

Review 5.  TET-mediated active DNA demethylation: mechanism, function and beyond.

Authors:  Xiaoji Wu; Yi Zhang
Journal:  Nat Rev Genet       Date:  2017-05-30       Impact factor: 53.242

6.  DNA Methylation-Dependent Gene Expression Regulation of Glutamate Transporters in Cultured Radial Glial Cells.

Authors:  Ada G Rodríguez-Campuzano; Luisa C Hernández-Kelly; Arturo Ortega
Journal:  Mol Neurobiol       Date:  2022-01-15       Impact factor: 5.590

Review 7.  Dynamic DNA methylation in the brain: a new epigenetic mark for experience-dependent plasticity.

Authors:  Paola Tognini; Debora Napoli; Tommaso Pizzorusso
Journal:  Front Cell Neurosci       Date:  2015-08-25       Impact factor: 5.505

Review 8.  Otx2-PNN Interaction to Regulate Cortical Plasticity.

Authors:  Clémence Bernard; Alain Prochiantz
Journal:  Neural Plast       Date:  2016-01-06       Impact factor: 3.599

9.  A Mouse Model for Conditional Secretion of Specific Single-Chain Antibodies Provides Genetic Evidence for Regulation of Cortical Plasticity by a Non-cell Autonomous Homeoprotein Transcription Factor.

Authors:  Clémence Bernard; Clémentine Vincent; Damien Testa; Eva Bertini; Jérôme Ribot; Ariel A Di Nardo; Michel Volovitch; Alain Prochiantz
Journal:  PLoS Genet       Date:  2016-05-12       Impact factor: 5.917

10.  Inhibition of DNA Methyltransferases Blocks Mutant Huntingtin-Induced Neurotoxicity.

Authors:  Yanchun Pan; Takuji Daito; Yo Sasaki; Yong Hee Chung; Xiaoyun Xing; Santhi Pondugula; S Joshua Swamidass; Ting Wang; Albert H Kim; Hiroko Yano
Journal:  Sci Rep       Date:  2016-08-12       Impact factor: 4.379
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