Literature DB >> 22781841

DNA methylation and its basic function.

Lisa D Moore1, Thuc Le, Guoping Fan.   

Abstract

In the mammalian genome, DNA methylation is an epigenetic mechanism involving the transfer of a methyl group onto the C5 position of the cytosine to form 5-methylcytosine. DNA methylation regulates gene expression by recruiting proteins involved in gene repression or by inhibiting the binding of transcription factor(s) to DNA. During development, the pattern of DNA methylation in the genome changes as a result of a dynamic process involving both de novo DNA methylation and demethylation. As a consequence, differentiated cells develop a stable and unique DNA methylation pattern that regulates tissue-specific gene transcription. In this chapter, we will review the process of DNA methylation and demethylation in the nervous system. We will describe the DNA (de)methylation machinery and its association with other epigenetic mechanisms such as histone modifications and noncoding RNAs. Intriguingly, postmitotic neurons still express DNA methyltransferases and components involved in DNA demethylation. Moreover, neuronal activity can modulate their pattern of DNA methylation in response to physiological and environmental stimuli. The precise regulation of DNA methylation is essential for normal cognitive function. Indeed, when DNA methylation is altered as a result of developmental mutations or environmental risk factors, such as drug exposure and neural injury, mental impairment is a common side effect. The investigation into DNA methylation continues to show a rich and complex picture about epigenetic gene regulation in the central nervous system and provides possible therapeutic targets for the treatment of neuropsychiatric disorders.

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Year:  2012        PMID: 22781841      PMCID: PMC3521964          DOI: 10.1038/npp.2012.112

Source DB:  PubMed          Journal:  Neuropsychopharmacology        ISSN: 0893-133X            Impact factor:   7.853


  209 in total

1.  Cloning, expression and chromosome locations of the human DNMT3 gene family.

Authors:  S Xie; Z Wang; M Okano; M Nogami; Y Li; W W He; K Okumura; E Li
Journal:  Gene       Date:  1999-08-05       Impact factor: 3.688

2.  Demethylation of the zygotic paternal genome.

Authors:  W Mayer; A Niveleau; J Walter; R Fundele; T Haaf
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

3.  DNA methyltransferase Dnmt1 associates with histone deacetylase activity.

Authors:  F Fuks; W A Burgers; A Brehm; L Hughes-Davies; T Kouzarides
Journal:  Nat Genet       Date:  2000-01       Impact factor: 38.330

4.  MED1, a novel human methyl-CpG-binding endonuclease, interacts with DNA mismatch repair protein MLH1.

Authors:  A Bellacosa; L Cicchillitti; F Schepis; A Riccio; A T Yeung; Y Matsumoto; E A Golemis; M Genuardi; G Neri
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

5.  Active demethylation of the paternal genome in the mouse zygote.

Authors:  J Oswald; S Engemann; N Lane; W Mayer; A Olek; R Fundele; W Dean; W Reik; J Walter
Journal:  Curr Biol       Date:  2000-04-20       Impact factor: 10.834

6.  Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2.

Authors:  R E Amir; I B Van den Veyver; M Wan; C Q Tran; U Francke; H Y Zoghbi
Journal:  Nat Genet       Date:  1999-10       Impact factor: 38.330

7.  The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites.

Authors:  B Hendrich; U Hardeland; H H Ng; J Jiricny; A Bird
Journal:  Nature       Date:  1999-09-16       Impact factor: 49.962

8.  DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development.

Authors:  M Okano; D W Bell; D A Haber; E Li
Journal:  Cell       Date:  1999-10-29       Impact factor: 41.582

9.  Recombinant human DNA (cytosine-5) methyltransferase. I. Expression, purification, and comparison of de novo and maintenance methylation.

Authors:  S Pradhan; A Bacolla; R D Wells; R J Roberts
Journal:  J Biol Chem       Date:  1999-11-12       Impact factor: 5.157

10.  MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex.

Authors:  H H Ng; Y Zhang; B Hendrich; C A Johnson; B M Turner; H Erdjument-Bromage; P Tempst; D Reinberg; A Bird
Journal:  Nat Genet       Date:  1999-09       Impact factor: 38.330

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  834 in total

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Authors:  Angélica Torres-Berrío; Giovanni Hernandez; Eric J Nestler; Cecilia Flores
Journal:  Biol Psychiatry       Date:  2020-05-11       Impact factor: 13.382

2.  Theoretical studies on the reaction of mono- and ditriflate derivatives of 1,4:3,6-dianhydro-D-mannitol with trimethylamine--Can a quaternary ammonium salt be a source of the methyl group?

Authors:  Justyna Bednarko; Justyna Wielińska; Karol Sikora; Beata Liberek; Andrzej Nowacki
Journal:  J Comput Aided Mol Des       Date:  2015-12-14       Impact factor: 3.686

3.  Dnmt3a2 in the Nucleus Accumbens Shell Is Required for Reinstatement of Cocaine Seeking.

Authors:  Nazzareno Cannella; Ana M M Oliveira; Thekla Hemstedt; Thomas Lissek; Elena Buechler; Hilmar Bading; Rainer Spanagel
Journal:  J Neurosci       Date:  2018-07-20       Impact factor: 6.167

4.  Prenatal ethanol exposure disrupts intraneocortical circuitry, cortical gene expression, and behavior in a mouse model of FASD.

Authors:  Hani El Shawa; Charles W Abbott; Kelly J Huffman
Journal:  J Neurosci       Date:  2013-11-27       Impact factor: 6.167

Review 5.  Childhood adversity and epigenetic regulation of glucocorticoid signaling genes: Associations in children and adults.

Authors:  Audrey R Tyrka; Kathryn K Ridout; Stephanie H Parade
Journal:  Dev Psychopathol       Date:  2016-10-03

6.  Association of DNA methyltransferase polymorphisms with susceptibility to primary gouty arthritis.

Authors:  Xiaowu Zhong; Yuanhong Peng; Chengjiao Yao; Yufeng Qing; Qibin Yang; Xiaolan Guo; Wenguang Xie; Mingcai Zhao; Xiaoming Cai; Jing-Guo Zhou
Journal:  Biomed Rep       Date:  2016-08-26

Review 7.  Evidence from clinical and animal model studies of the long-term and transgenerational impact of stress on DNA methylation.

Authors:  Jennifer Blaze; Tania L Roth
Journal:  Semin Cell Dev Biol       Date:  2015-04-23       Impact factor: 7.727

Review 8.  Genomic approaches in the search for molecular biomarkers in chronic kidney disease.

Authors:  M Cañadas-Garre; K Anderson; J McGoldrick; A P Maxwell; A J McKnight
Journal:  J Transl Med       Date:  2018-10-25       Impact factor: 5.531

Review 9.  Establishing a role for environmental toxicant exposure induced epigenetic remodeling in malignant transformation.

Authors:  Kristen M Humphrey; Sumali Pandey; Jeffery Martin; Tamara Hagoel; Anne Grand'Maison; Joyce E Ohm
Journal:  Semin Cancer Biol       Date:  2018-11-16       Impact factor: 15.707

Review 10.  Epigenetics of early-life lead exposure and effects on brain development.

Authors:  Marie-Claude Senut; Pablo Cingolani; Arko Sen; Adele Kruger; Asra Shaik; Helmut Hirsch; Steven T Suhr; Douglas Ruden
Journal:  Epigenomics       Date:  2012-12       Impact factor: 4.778

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